Factsheet for Bra019910.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93396	Canola	cytosol	97.7	88.39
CDY37958	Canola	cytosol, plastid	97.04	87.02
AT1G10650.1	Thale cress	nucleus	81.91	73.45
Bra018428.1-P	Field mustard	nucleus	81.58	73.37
Bra031495.1-P	Field mustard	nucleus	65.13	60.55
KRH69583	Soybean	nucleus	55.59	50.15
KRH74575	Soybean	cytosol	55.26	49.85
VIT_01s0127g00360.t01	Wine grape	nucleus	54.93	47.31
PGSC0003DMT400035059	Potato	nucleus	51.64	47.29
Solyc05g005210.2.1	Tomato	nucleus	50.0	45.51
Bra040255.1-P	Field mustard	nucleus	26.64	35.37
TraesCSU01G113400.1	Wheat	nucleus	38.82	33.62
TraesCS6B01G118100.1	Wheat	cytosol, nucleus, plastid	37.5	32.66
HORVU6Hr1G015410.5	Barley	cytosol, mitochondrion, nucleus	38.49	31.71
TraesCS6A01G084400.1	Wheat	cytosol, nucleus, plastid	36.51	31.62
Os02t0130300-02	Rice	cytosol, nucleus, plastid	34.87	30.9
Bra024967.1-P	Field mustard	plastid	25.0	30.77
Zm00001d015130_P001	Maize	cytosol, nucleus, plastid	35.86	30.62
KXG29382	Sorghum	cytosol, mitochondrion, peroxisome, plastid	36.18	30.14
Bra017511.1-P	Field mustard	nucleus	27.96	28.15
Bra014051.1-P	Field mustard	nucleus	27.63	27.01
Bra039354.1-P	Field mustard	cytosol	23.36	21.85
Bra039533.1-P	Field mustard	cytosol, nucleus, plastid	20.72	21.28
Bra013423.1-P	Field mustard	nucleus	20.72	21.28
Bra012532.1-P	Field mustard	nucleus	21.05	20.91
Bra022093.1-P	Field mustard	nucleus	15.13	20.91
Bra001477.1-P	Field mustard	nucleus	23.03	20.59
Bra034718.1-P	Field mustard	nucleus	22.7	20.47
Bra035092.1-P	Field mustard	nucleus	20.72	19.94
Bra027588.1-P	Field mustard	cytosol, nucleus, plastid	18.09	19.71
Bra012650.1-P	Field mustard	nucleus	22.37	19.48
Bra011582.1-P	Field mustard	cytosol, nucleus, plastid	14.14	19.46
Bra028364.1-P	Field mustard	cytosol, nucleus, plastid	17.11	18.44
Bra017691.1-P	Field mustard	cytosol, extracellular, nucleus	13.82	17.87
Bra034672.1-P	Field mustard	cytosol	14.14	17.13

Protein Annotations

EnsemblPlants:Bra019910.1	EnsemblPlants:Bra019910.1-P	EnsemblPlantsGene:Bra019910	Gene3D:1.10.1170.10	Gene3D:1.10.533.10	InterPro:E3ligase_BOI_like
InterPro:IPR001841	InterPro:Znf_RING	ncoils:Coil	PANTHER:PTHR42647	PANTHER:PTHR42647:SF8	PFAM:PF13920
PFscan:PS50089	PIRSF:PIRSF036836	SEG:seg	UniParc:UPI000253EA90	UniProt:M4DTR7	MapMan:35.1

Description

AT1G10650 (E=7e-075) | protein binding / zinc ion binding

Coordinates

chrA06:-:3752425..3753635

Molecular Weight (calculated)

34094.3 Da

IEP (calculated)

8.566

GRAVY (calculated)

-0.719

Length

304 amino acids

Sequence
(BLAST)

001: MLSGNNGNTA PQVFMNENQL QYHTNTQSNQ LHLLGTMGGG GCTTVNPVNY FANDNLVPMV RPNKRGREAE SISNNNSIQR QHQLQMSLNY NHSVQEEALK
101: ENLVSTGLRL SYDDEERNSS VTSASGSIAA QMAKGVRDIK QRQITSLLNT IEQGVSRKLQ EKDQEIEIMN RKNKELVERI KQVTTEAQNW HHRAKYNESV
201: VIALKNNLQQ AMSHNNNNKK VTADQGKEGF GDSEIDDAAS SYIDPNNKKM GNQRMRCRMC NAREVSVLLV PCRHLSLCKE CDVFTGVCPV CKSLKTSSVQ
301: VFFS

Best Arabidopsis Sequence Match ( AT1G10650.1 )
(BLAST)

001: MLSGNNGNTA PPVFMNENQL QYQTNLRSNQ LHLLGNMGGG CTVDPVNYFA NDNLVPMIRP NKRGREAESI SNNIQRQQQK LQMSLNYNYN NTSVREEVPK
101: ENLVSTGLRL SYDDDEHNSS VTSASGSILA ASPIFQSLDD SLRIDLHRQK DEFDQFIKIQ AAQMAKGVRD MKQRHIASFL TTLEKGVSKK LQEKDHEIND
201: MNKKNKELVE RIKQVAMEAQ NWHYRAKYNE SVVNVLKANL QQAMSHNNSV IAAADQGKEG FGDSEIDDAA SSYIDPNNNN NNNMGIHQRM RCKMCNVKEV
301: SVLIVPCRHL SLCKECDVFT KICPVCKSLK SSCVQVFFS

Arabidopsis Description

Putative S-ribonuclease binding protein SBP1 [Source:UniProtKB/TrEMBL;Acc:Q84JF9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.