Factsheet for Bra039533.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26402	Canola	cytosol	98.31	98.31
Bra027588.1-P	Field mustard	cytosol, nucleus, plastid	62.84	66.67
AT5G45100.1	Thale cress	cytosol	66.22	66.67
Bra028364.1-P	Field mustard	cytosol, nucleus, plastid	60.81	63.83
Bra012532.1-P	Field mustard	nucleus	60.47	58.5
Bra013423.1-P	Field mustard	nucleus	57.43	57.43
KRH36722	Soybean	nucleus	47.97	45.81
KRH11729	Soybean	nucleus	47.64	45.05
VIT_10s0042g01070.t01	Wine grape	nucleus	44.26	43.23
KRG89416	Soybean	nucleus	44.93	42.36
PGSC0003DMT400062617	Potato	nucleus	42.91	42.33
GSMUA_Achr2P13160_001	Banana	plastid	35.14	42.11
GSMUA_Achr4P23050_001	Banana	nucleus	26.69	42.02
KRH50476	Soybean	cytosol, nucleus, plastid	45.27	41.88
PGSC0003DMT400026783	Potato	cytosol, mitochondrion, nucleus, plastid, vacuole	45.61	41.8
GSMUA_Achr7P00850_001	Banana	plastid	31.42	40.43
Solyc02g031710.2.1	Tomato	nucleus	42.23	40.32
GSMUA_Achr4P32070_001	Banana	nucleus	38.18	39.51
GSMUA_Achr4P28300_001	Banana	nucleus	31.42	38.59
GSMUA_Achr5P02100_001	Banana	plastid	31.42	38.11
Bra035092.1-P	Field mustard	nucleus	38.85	36.39
Solyc02g069180.2.1	Tomato	plastid	34.12	35.69
GSMUA_Achr6P31690_001	Banana	nucleus	34.8	34.56
Bra039354.1-P	Field mustard	cytosol	37.16	33.85
Bra034718.1-P	Field mustard	nucleus	37.84	33.23
GSMUA_Achr9P09830_001	Banana	nucleus	35.14	32.4
Bra001477.1-P	Field mustard	nucleus	36.82	32.06
TraesCS7D01G431300.1	Wheat	mitochondrion	33.11	31.31
TraesCS3D01G441300.1	Wheat	mitochondrion	30.41	31.03
TraesCS3A01G448500.1	Wheat	mitochondrion	30.41	30.72
TraesCS3D01G441000.1	Wheat	mitochondrion	30.07	30.69
TraesCS3B01G484600.1	Wheat	cytosol	28.38	30.55
TraesCS6A01G079900.1	Wheat	cytosol, mitochondrion, plastid	24.66	30.54
TraesCS7A01G442100.1	Wheat	mitochondrion	32.09	30.25
TraesCS4B01G019600.1	Wheat	mitochondrion	31.08	29.68
HORVU4Hr1G003180.3	Barley	mitochondrion	30.74	29.64
TraesCS4D01G018100.1	Wheat	mitochondrion, nucleus	30.07	29.37
EER91098	Sorghum	nucleus	35.14	29.3
TraesCS7B01G340700.1	Wheat	mitochondrion	30.41	28.85
Zm00001d013571_P001	Maize	cytosol, nucleus, plastid	32.09	28.79
HORVU6Hr1G021880.1	Barley	plastid	25.34	28.74
HORVU6Hr1G021960.1	Barley	plastid	25.34	28.74
TraesCS7A01G442300.1	Wheat	mitochondrion	30.74	28.71
HORVU7Hr1G100520.1	Barley	cytosol, mitochondrion	29.73	28.66
TraesCS7B01G340600.1	Wheat	mitochondrion	30.07	28.53
TraesCS7B01G340500.1	Wheat	mitochondrion	30.07	28.25
TraesCS7D01G431200.1	Wheat	mitochondrion	29.39	28.25
TraesCS4A01G293700.1	Wheat	mitochondrion	29.39	28.25
TraesCS6D01G073600.1	Wheat	cytosol, nucleus, plastid	25.68	28.04
TraesCS7A01G441900.1	Wheat	mitochondrion	29.73	27.85
HORVU7Hr1G100540.2	Barley	mitochondrion	28.38	27.63
TraesCS6D01G110700.1	Wheat	nucleus	24.32	27.38
TraesCS7D01G431100.1	Wheat	mitochondrion, nucleus	28.72	27.07
Bra011582.1-P	Field mustard	cytosol, nucleus, plastid	19.93	26.7
TraesCS6B01G149100.1	Wheat	nucleus	23.65	26.62
TraesCS6A01G120700.1	Wheat	nucleus	22.97	25.86
Bra024967.1-P	Field mustard	plastid	20.95	25.1
Zm00001d033419_P001	Maize	plastid	23.65	25.0
Bra017691.1-P	Field mustard	cytosol, extracellular, nucleus	19.59	24.68
Bra034672.1-P	Field mustard	cytosol	20.27	23.9
Bra040255.1-P	Field mustard	nucleus	17.57	22.71
Bra017511.1-P	Field mustard	nucleus	22.64	22.19
Bra019910.1-P	Field mustard	nucleus, plastid	21.28	20.72
Bra031495.1-P	Field mustard	nucleus	22.3	20.18
Bra018428.1-P	Field mustard	nucleus	22.3	19.53
Bra014051.1-P	Field mustard	nucleus	20.27	19.29
Bra012650.1-P	Field mustard	nucleus	19.93	16.91
Bra022093.1-P	Field mustard	nucleus	10.47	14.09

Protein Annotations

EnsemblPlants:Bra039533.1	EnsemblPlants:Bra039533.1-P	EnsemblPlantsGene:Bra039533	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR42647	PANTHER:PTHR42647:SF12	PFAM:PF13920	PFscan:PS50089
UniParc:UPI000253E9BD	UniProt:M4FEL2	MapMan:35.1	:	:	:

Description

AT5G45100 (E=4e-099) | protein binding / zinc ion binding

Coordinates

chrScaffold000167:+:292873..293845

Molecular Weight (calculated)

32627.5 Da

IEP (calculated)

5.198

GRAVY (calculated)

-0.383

Length

296 amino acids

Sequence
(BLAST)

001: MAVEATYMNL FASQFTTTGE YVKFETNMNN DITVGFPTTF GVQKLPYART IESESDLTYN FNKSPAPPSI SKRQRDHTFD INAPMPSQKR RSCAFEPQTS
101: FMDAQIQQQQ SEIDRFVAQQ TETLRLELEA RQQTQTRILA SAVQSAIIKT LKAKDDEIAR MGKLNGALQE RVKSLYVENQ IWRDLAQTNE ATANTLRSNL
201: EQVLAQVDDF PGTVNGGDGF RHSVEEDAVS SCGSCEGADG AVTGGCRRCG ERRASVLVLP CRHLCLCTVC GSALLQACPV CDTVMNASVH VNMSDS

Best Arabidopsis Sequence Match ( AT5G45100.1 )
(BLAST)

001: MAVEARHMNL FSSQYITNRE CVKSQTNMNN GQQIAGGGFP VTIGDRNLQY IDPINSFNKS ESELTAISKR QRDSTFDSDA LIASQKRRAI AFSPASLIDA
101: ELVSQIQQQN SEIDRFVAQQ TETLRIELEA RQRTQTRMLA SAVQNAILKK LKAKDEEIIR MGKLNWVLQE RVKNLYVENQ IWRDLAQTNE ATANNLRSNL
201: EQVLAQVDDL DAFRRPLVEE ADDAESSCGS CDGGDVTAVV NGGCKRCGEL TASVLVLPCR HLCLCTVCGS SALLRTCPVC DMVMTASVHV NMSS

Arabidopsis Description

BRG1BOI-related E3 ubiquitin-protein ligase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHE4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.