Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G079900.1 | Wheat | cytosol, mitochondrion, plastid | 76.38 | 86.61 |
| TraesCS6D01G110700.1 | Wheat | nucleus | 51.66 | 53.23 |
| TraesCS3D01G441300.1 | Wheat | mitochondrion | 56.83 | 53.1 |
| TraesCS3D01G441000.1 | Wheat | mitochondrion | 56.09 | 52.41 |
| TraesCS7D01G431300.1 | Wheat | mitochondrion | 55.72 | 48.24 |
| TraesCS4D01G018100.1 | Wheat | mitochondrion, nucleus | 53.87 | 48.18 |
| TraesCS7D01G431100.1 | Wheat | mitochondrion, nucleus | 55.72 | 48.09 |
| TraesCS7D01G431200.1 | Wheat | mitochondrion | 53.14 | 46.75 |
| GSMUA_Achr7P00850_001 | Banana | plastid | 28.41 | 33.48 |
| Zm00001d013571_P001 | Maize | cytosol, nucleus, plastid | 40.59 | 33.33 |
| GSMUA_Achr4P23050_001 | Banana | nucleus | 22.88 | 32.98 |
| EER91098 | Sorghum | nucleus | 42.07 | 32.11 |
| GSMUA_Achr2P13160_001 | Banana | plastid | 29.15 | 31.98 |
| GSMUA_Achr4P28300_001 | Banana | nucleus | 28.41 | 31.95 |
| GSMUA_Achr4P32070_001 | Banana | nucleus | 33.21 | 31.47 |
| GSMUA_Achr5P02100_001 | Banana | plastid | 28.04 | 31.15 |
| GSMUA_Achr6P31690_001 | Banana | nucleus | 32.47 | 29.53 |
| CDX94520 | Canola | cytosol | 25.46 | 29.49 |
| CDY07541 | Canola | cytosol | 25.46 | 29.49 |
| CDY09318 | Canola | cytosol | 25.46 | 29.49 |
| CDY21311 | Canola | cytosol | 25.46 | 29.49 |
| KRH43767 | Soybean | nucleus | 27.31 | 29.25 |
| VIT_10s0042g01070.t01 | Wine grape | nucleus | 31.73 | 28.38 |
| GSMUA_Achr9P09830_001 | Banana | nucleus | 32.84 | 27.73 |
| VIT_19s0027g00740.t01 | Wine grape | nucleus | 31.0 | 27.18 |
| KRH36722 | Soybean | nucleus | 31.0 | 27.1 |
| KRH50476 | Soybean | cytosol, nucleus, plastid | 31.37 | 26.56 |
| KRH11729 | Soybean | nucleus | 30.63 | 26.52 |
| KRG89416 | Soybean | nucleus | 30.63 | 26.43 |
| PGSC0003DMT400062617 | Potato | nucleus | 28.78 | 26.0 |
| AT4G19700.1 | Thale cress | cytosol | 29.15 | 25.99 |
| AT5G45100.1 | Thale cress | cytosol | 28.04 | 25.85 |
| CDY26402 | Canola | cytosol | 28.04 | 25.68 |
| Bra039533.1-P | Field mustard | cytosol, nucleus, plastid | 28.04 | 25.68 |
| CDX87407 | Canola | nucleus | 29.89 | 25.63 |
| Bra035092.1-P | Field mustard | nucleus | 29.89 | 25.63 |
| Solyc02g031710.2.1 | Tomato | nucleus | 28.78 | 25.16 |
| Bra013423.1-P | Field mustard | nucleus | 27.31 | 25.0 |
| CDX88507 | Canola | nucleus | 27.31 | 24.83 |
| CDY51918 | Canola | cytosol | 26.2 | 24.74 |
| Zm00001d033419_P001 | Maize | plastid | 25.46 | 24.64 |
| Bra012532.1-P | Field mustard | nucleus | 27.68 | 24.51 |
| CDY71607 | Canola | cytosol | 27.68 | 24.51 |
| CDY01615 | Canola | cytosol | 27.31 | 24.26 |
| PGSC0003DMT400026783 | Potato | cytosol, mitochondrion, nucleus, plastid, vacuole | 28.78 | 24.15 |
| CDX79294 | Canola | nucleus | 26.57 | 23.68 |
| CDY71192 | Canola | cytosol | 24.35 | 23.57 |
| KRH13682 | Soybean | nucleus | 29.15 | 23.44 |
| CDY18062 | Canola | cytosol | 24.35 | 23.4 |
| Bra028364.1-P | Field mustard | cytosol, nucleus, plastid | 24.35 | 23.4 |
| AT3G12920.1 | Thale cress | nucleus | 28.41 | 22.99 |
| CDY46345 | Canola | cytosol | 23.62 | 22.7 |
| Bra001477.1-P | Field mustard | nucleus | 28.41 | 22.65 |
| CDY13070 | Canola | cytosol | 23.25 | 22.58 |
| Bra027588.1-P | Field mustard | cytosol, nucleus, plastid | 23.25 | 22.58 |
| CDY24237 | Canola | nucleus | 26.94 | 22.53 |
| CDX82568 | Canola | nucleus | 28.04 | 22.35 |
| Bra034718.1-P | Field mustard | nucleus | 27.68 | 22.26 |
| Bra039354.1-P | Field mustard | cytosol | 26.57 | 22.15 |
| CDY43390 | Canola | cytosol | 26.57 | 22.15 |
| AT1G79110.1 | Thale cress | nucleus | 29.15 | 22.07 |
| CDY64561 | Canola | nucleus | 27.68 | 22.06 |
| TraesCS2D01G288000.1 | Wheat | cytosol | 25.09 | 21.05 |
| TraesCS2D01G287900.1 | Wheat | cytosol | 24.35 | 20.62 |
| Solyc02g069180.2.1 | Tomato | plastid | 21.03 | 20.14 |
| TraesCS6D01G243000.1 | Wheat | cytosol | 21.77 | 17.66 |
| TraesCS1D01G217800.1 | Wheat | cytosol | 20.3 | 17.13 |
| CDY23552 | Canola | cytosol | 12.18 | 15.21 |
| TraesCS4D01G215600.1 | Wheat | plastid | 18.45 | 14.75 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G073600.1 | EnsemblPlantsGene:TraesCS6D01G073600 | Gene3D:3.30.40.10 | InterPro:E3ligase_BOI_like | InterPro:IPR013083 | InterPro:Znf_RING/FYVE/PHD |
| PANTHER:PTHR42647 | PANTHER:PTHR42647:SF12 | PIRSF:PIRSF036836 | SEG:seg | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr6D:-:37659125..37660037
Molecular Weight (calculated)
29684.7 Da
IEP (calculated)
7.425
GRAVY (calculated)
-0.429
Length
271 amino acids
Sequence
(BLAST)
(BLAST)
001: MVDAKSLHQI ILDTGHHQPA ANQGFAVGAS AAAMPMSGPP LPPPLGLRLD GAQEMATNKR KRDQQSSMLG AAQAQQQPIV VDHNMRNHAE KMCTTSREQR
101: QRHISMMIST VVAKARKQLE AKDQEIEWIR SMNWALKERI RNLHMEAQAW RNVAQSSETV ANVLRTDLQQ VLEQQAVRGS GSDGGEGTAG PCWGEKHVAF
201: CREEHEEEGE TPAVEPRVTE VEMCKGCGQR APVVLLLPCR HLCVCAPCAE AARVCPSCMC VKTGCTSVNF S
101: QRHISMMIST VVAKARKQLE AKDQEIEWIR SMNWALKERI RNLHMEAQAW RNVAQSSETV ANVLRTDLQQ VLEQQAVRGS GSDGGEGTAG PCWGEKHVAF
201: CREEHEEEGE TPAVEPRVTE VEMCKGCGQR APVVLLLPCR HLCVCAPCAE AARVCPSCMC VKTGCTSVNF S
001: MNNGQQIAGG GFPVTIGDRN LQYIDPINSF NKSESELTAI SKRQRDSTFD SDALIASQKR RAIAFSPASL IDAELVSQIQ QQNSEIDRFV AQQTETLRIE
101: LEARQRTQTR MLASAVQNAI LKKLKAKDEE IIRMGKLNWV LQERVKNLYV ENQIWRDLAQ TNEATANNLR SNLEQVLAQV DDLDAFRRPL VEEADDAESS
201: CGSCDGGDVT AVVNGGCKRC GELTASVLVL PCRHLCLCTV CGSSALLRTC PVCDMVMTAS VHVNMSS
101: LEARQRTQTR MLASAVQNAI LKKLKAKDEE IIRMGKLNWV LQERVKNLYV ENQIWRDLAQ TNEATANNLR SNLEQVLAQV DDLDAFRRPL VEEADDAESS
201: CGSCDGGDVT AVVNGGCKRC GELTASVLVL PCRHLCLCTV CGSSALLRTC PVCDMVMTAS VHVNMSS
Arabidopsis Description
BRG1BOI-related E3 ubiquitin-protein ligase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHE4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.