Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G067700.1 | Wheat | nucleus | 95.59 | 94.63 |
| TraesCS5D01G071800.1 | Wheat | nucleus | 94.92 | 94.59 |
| HORVU5Hr1G015120.1 | Barley | nucleus | 86.78 | 84.77 |
| TraesCS5A01G373100.1 | Wheat | nucleus | 77.97 | 77.18 |
| TraesCS2A01G433000.1 | Wheat | nucleus | 61.69 | 55.49 |
| Os08t0235800-00 | Rice | nucleus | 62.37 | 53.49 |
| Zm00001d050195_P001 | Maize | nucleus | 55.25 | 53.27 |
| EES14755 | Sorghum | nucleus | 56.27 | 52.2 |
| Zm00001d024376_P001 | Maize | nucleus | 54.58 | 51.77 |
| GSMUA_Achr9P22950_001 | Banana | nucleus | 44.07 | 46.26 |
| CDY20325 | Canola | nucleus | 44.07 | 45.94 |
| TraesCS2A01G270200.2 | Wheat | nucleus | 49.15 | 45.31 |
| CDY60852 | Canola | nucleus | 45.76 | 45.3 |
| CDX72310 | Canola | nucleus | 43.39 | 45.07 |
| CDX68763 | Canola | nucleus | 45.08 | 44.63 |
| CDY13441 | Canola | nucleus | 43.39 | 43.69 |
| Solyc08g006320.2.1 | Tomato | nucleus | 48.14 | 43.29 |
| Bra011282.1-P | Field mustard | nucleus | 47.12 | 43.17 |
| PGSC0003DMT400024632 | Potato | nucleus | 48.14 | 42.52 |
| CDY23304 | Canola | nucleus | 44.07 | 42.48 |
| AT2G24570.1 | Thale cress | nucleus | 46.1 | 42.37 |
| AT4G31550.1 | Thale cress | nucleus | 46.44 | 42.15 |
| CDY45583 | Canola | nucleus | 46.1 | 41.85 |
| GSMUA_Achr3P27880_001 | Banana | nucleus | 38.98 | 41.82 |
| Bra023998.1-P | Field mustard | nucleus | 46.44 | 41.77 |
| Bra032084.1-P | Field mustard | nucleus | 45.76 | 41.54 |
| CDY36432 | Canola | nucleus | 39.32 | 41.13 |
| PGSC0003DMT400075531 | Potato | nucleus | 43.05 | 40.71 |
| Bra010231.1-P | Field mustard | nucleus | 44.75 | 39.76 |
| Solyc12g096350.1.1 | Tomato | nucleus | 41.36 | 36.09 |
| TraesCS4A01G246000.2 | Wheat | nucleus | 33.22 | 28.08 |
| TraesCS5A01G059100.1 | Wheat | nucleus | 33.22 | 27.61 |
| TraesCS5A01G381000.1 | Wheat | nucleus | 31.86 | 23.68 |
| TraesCS5A01G443600.1 | Wheat | nucleus | 30.85 | 20.31 |
| TraesCS3A01G289700.2 | Wheat | nucleus | 18.98 | 19.51 |
| TraesCS3A01G229300.1 | Wheat | nucleus | 20.68 | 19.3 |
| TraesCS5A01G495800.1 | Wheat | nucleus | 17.97 | 17.97 |
| TraesCS1A01G197400.1 | Wheat | nucleus | 20.0 | 17.25 |
| TraesCS3A01G281900.1 | Wheat | nucleus | 16.95 | 16.78 |
| TraesCS4A01G320800.2 | Wheat | nucleus | 18.64 | 14.91 |
| TraesCS7A01G343000.2 | Wheat | nucleus | 17.29 | 14.33 |
| TraesCS2A01G443800.1 | Wheat | nucleus | 23.39 | 13.56 |
| TraesCS6A01G267500.1 | Wheat | nucleus | 21.36 | 13.1 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR003657 | InterPro:IPR036576 | PFAM:PF03106 | PFAM:PF10533 |
| PFscan:PS50811 | PANTHER:PTHR31282 | PANTHER:PTHR31282:SF32 | SMART:SM00774 | SUPFAM:SSF118290 | EnsemblPlantsGene:TraesCS5A01G060200 |
| EnsemblPlants:TraesCS5A01G060200.1 | InterPro:WRKY_dom | InterPro:WRKY_dom_sf | InterPro:Zn-cluster-dom | SEG:seg | : |
Description
No Description!
Coordinates
chr5A:-:60413461..60414467
Molecular Weight (calculated)
31131.0 Da
IEP (calculated)
9.982
GRAVY (calculated)
-0.442
Length
295 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVELMGCGY APHGHAAEAE EQFQEAAAAG LLSLELIISS FSSRAGCAPP LGEMADQAVS RFRRVINILD RTGHARFRRG PVGADADSLT PPPVSSAPPP
101: MPAQAPTPAV SPQLAPQKSM TLDFTKPLKA PAAASVAAPS VTSTSFFSSV TAGGEGSVSK GWSQLVSSGK PPLPAGTKRK QRQQQTRCAH SDAAAGGRCH
201: CSKKRKNRVK YTTRVPTVTS GAADIPGVGD KYSWRKYGQK TIKGSPHPRC YYRCGTVKGC PARKHVERAT DDPAMLVVTY EGDHCHDTWP PAAAN
101: MPAQAPTPAV SPQLAPQKSM TLDFTKPLKA PAAASVAAPS VTSTSFFSSV TAGGEGSVSK GWSQLVSSGK PPLPAGTKRK QRQQQTRCAH SDAAAGGRCH
201: CSKKRKNRVK YTTRVPTVTS GAADIPGVGD KYSWRKYGQK TIKGSPHPRC YYRCGTVKGC PARKHVERAT DDPAMLVVTY EGDHCHDTWP PAAAN
001: MAVELMTRNY ISGVGADSFA VQEAAASGLK SIENFIGLMS RDSFNSDQPS SSSASASASA AADLESARNT TADAAVSKFK RVISLLDRTR TGHARFRRAP
101: VHVISPVLLQ EEPKTTPFQS PLPPPPQMIR KGSFSSSMKT IDFSSLSSVT TESDNQKKIH HHQRPSETAP FASQTQSLST TVSSFSKSTK RKCNSENLLT
201: GKCASASSSG RCHCSKKRKI KQRRIIRVPA ISAKMSDVPP DDYSWRKYGQ KPIKGSPHPR GYYKCSSVRG CPARKHVERA ADDSSMLIVT YEGDHNHSLS
301: AADLAGAAVA DLILESS
101: VHVISPVLLQ EEPKTTPFQS PLPPPPQMIR KGSFSSSMKT IDFSSLSSVT TESDNQKKIH HHQRPSETAP FASQTQSLST TVSSFSKSTK RKCNSENLLT
201: GKCASASSSG RCHCSKKRKI KQRRIIRVPA ISAKMSDVPP DDYSWRKYGQ KPIKGSPHPR GYYKCSSVRG CPARKHVERA ADDSSMLIVT YEGDHNHSLS
301: AADLAGAAVA DLILESS
Arabidopsis Description
WRKY15Probable WRKY transcription factor 15 [Source:UniProtKB/Swiss-Prot;Acc:O22176]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.