Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G390800.1 | Wheat | nucleus | 95.97 | 96.7 |
| TraesCS5B01G384600.1 | Wheat | nucleus | 95.97 | 95.25 |
| HORVU5Hr1G094050.1 | Barley | nucleus | 93.45 | 93.92 |
| Os03t0741400-01 | Rice | nucleus | 80.35 | 82.43 |
| Zm00001d033965_P001 | Maize | nucleus | 77.08 | 77.08 |
| EER93478 | Sorghum | nucleus | 77.83 | 76.11 |
| GSMUA_Achr10P... | Banana | nucleus | 38.29 | 50.33 |
| Solyc09g066010.2.1 | Tomato | nucleus | 41.06 | 49.24 |
| PGSC0003DMT400038986 | Potato | nucleus | 42.07 | 48.27 |
| Bra040396.1-P | Field mustard | nucleus | 36.78 | 48.18 |
| VIT_07s0141g00680.t01 | Wine grape | nucleus | 41.06 | 47.94 |
| CDY50747 | Canola | nucleus | 36.52 | 47.85 |
| CDY40667 | Canola | nucleus | 37.78 | 47.17 |
| KRH71315 | Soybean | nucleus | 42.07 | 47.04 |
| CDX74175 | Canola | nucleus | 37.78 | 46.73 |
| TraesCS5A01G059100.1 | Wheat | nucleus | 41.56 | 46.48 |
| TraesCS4A01G246000.2 | Wheat | nucleus | 40.55 | 46.13 |
| Bra001117.1-P | Field mustard | nucleus | 37.03 | 46.08 |
| CDY41890 | Canola | nucleus | 36.27 | 46.01 |
| AT3G04670.1 | Thale cress | nucleus | 38.04 | 45.76 |
| KRH67313 | Soybean | nucleus | 39.29 | 45.75 |
| Solyc06g008610.2.1 | Tomato | nucleus | 39.55 | 45.11 |
| PGSC0003DMT400013632 | Potato | nucleus | 39.29 | 43.94 |
| AT5G28650.1 | Thale cress | nucleus | 36.02 | 43.33 |
| Bra010005.1-P | Field mustard | nucleus | 37.03 | 43.11 |
| CDX86205 | Canola | nucleus | 37.03 | 43.11 |
| CDY48658 | Canola | nucleus | 36.52 | 43.03 |
| CDY33884 | Canola | nucleus | 36.27 | 42.73 |
| Bra020617.1-P | Field mustard | nucleus | 36.27 | 42.73 |
| CDY05601 | Canola | nucleus | 36.02 | 42.43 |
| KRH32116 | Soybean | extracellular | 40.3 | 40.82 |
| TraesCS2A01G270200.2 | Wheat | nucleus | 26.95 | 33.44 |
| TraesCS2A01G433000.1 | Wheat | nucleus | 26.45 | 32.01 |
| TraesCS5A01G060200.1 | Wheat | nucleus | 23.68 | 31.86 |
| TraesCS5A01G373100.1 | Wheat | nucleus | 23.43 | 31.21 |
| TraesCS5A01G443600.1 | Wheat | nucleus | 31.23 | 27.68 |
| TraesCS5A01G495800.1 | Wheat | nucleus | 14.61 | 19.66 |
| TraesCS3A01G229300.1 | Wheat | nucleus | 14.86 | 18.67 |
| TraesCS3A01G289700.2 | Wheat | nucleus | 12.59 | 17.42 |
| TraesCS4A01G320800.2 | Wheat | nucleus | 16.12 | 17.34 |
| TraesCS1A01G197400.1 | Wheat | nucleus | 14.36 | 16.67 |
| TraesCS3A01G281900.1 | Wheat | nucleus | 12.09 | 16.11 |
| TraesCS7A01G343000.2 | Wheat | nucleus | 14.36 | 16.01 |
| TraesCS2A01G443800.1 | Wheat | nucleus | 15.87 | 12.38 |
| TraesCS6A01G267500.1 | Wheat | nucleus | 14.61 | 12.06 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR003657 | InterPro:IPR036576 | PFAM:PF03106 | PFAM:PF10533 |
| PFscan:PS50811 | PANTHER:PTHR31282 | PANTHER:PTHR31282:SF20 | SMART:SM00774 | SUPFAM:SSF118290 | EnsemblPlantsGene:TraesCS5A01G381000 |
| EnsemblPlants:TraesCS5A01G381000.1 | InterPro:WRKY_dom | InterPro:WRKY_dom_sf | InterPro:Zn-cluster-dom | SEG:seg | : |
Description
No Description!
Coordinates
chr5A:+:578447360..578449273
Molecular Weight (calculated)
42606.7 Da
IEP (calculated)
10.616
GRAVY (calculated)
-0.605
Length
397 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGMVESNRE AVQSCHKVLD LLSNPHGQLV PHKDLVEATG AAVAKFGSLA SKISSGNGRQ GHARFRQRIK KPMPLFDSNL FRDSPASAAA ADATAAPPKT
101: SSPGPSTSLQ LFPRYQQMEA SPSKDPVRIP AAQFPQRMVV ENPSVGSNGP ARGPQLQLVQ PVSVAPPAGT PAPALPAAHL HFIQQQQSYQ RFQLMHQMKL
201: QSEMMKRGGH GDQGGSAGAG KGVNLKFDGS NCTGSSSRSF LTSLSMEGSM ASLDGSRSSR PFQLVSGSQT SSTPELGLMQ QRRRCAGKED GSGRCATGSR
301: CHCAKKRKLR IRRSIKVPAI SNKVADIPAD EFSWRKYGQK PIKGSPHPRG YYKCSSVRGC PARKHVERCV DDPAMLIVTY EGDHNHNHNQ AAAAQPA
101: SSPGPSTSLQ LFPRYQQMEA SPSKDPVRIP AAQFPQRMVV ENPSVGSNGP ARGPQLQLVQ PVSVAPPAGT PAPALPAAHL HFIQQQQSYQ RFQLMHQMKL
201: QSEMMKRGGH GDQGGSAGAG KGVNLKFDGS NCTGSSSRSF LTSLSMEGSM ASLDGSRSSR PFQLVSGSQT SSTPELGLMQ QRRRCAGKED GSGRCATGSR
301: CHCAKKRKLR IRRSIKVPAI SNKVADIPAD EFSWRKYGQK PIKGSPHPRG YYKCSSVRGC PARKHVERCV DDPAMLIVTY EGDHNHNHNQ AAAAQPA
001: MEEIEGTNRA AVESCHRVLN LLHRSQQQDH VGFEKNLVSE TREAVIRFKR VGSLLSSSVG HARFRRAKKL QSHVSQSLLL DPCQQRTTEV PSSSSQKTPV
101: LRSGFQELSL RQPSDSLTLG TRSFSLNSNA KAPLLQLNQQ TMPPSNYPTL FPVQQQQQQQ QQQQQQEQQQ QQQQQQQQFH ERLQAHHLHQ QQQLQKHQAE
201: LMLRKCNGGI SLSFDNSSCT PTMSSTRSFV SSLSIDGSVA NIEGKNSFHF GVPSSTDQNS LHSKRKCPLK GDEHGSLKCG SSSRCHCAKK RKHRVRRSIR
301: VPAISNKVAD IPPDDYSWRK YGQKPIKGSP YPRGYYKCSS MRGCPARKHV ERCLEDPAML IVTYEAEHNH PKLPSQAITT
101: LRSGFQELSL RQPSDSLTLG TRSFSLNSNA KAPLLQLNQQ TMPPSNYPTL FPVQQQQQQQ QQQQQQEQQQ QQQQQQQQFH ERLQAHHLHQ QQQLQKHQAE
201: LMLRKCNGGI SLSFDNSSCT PTMSSTRSFV SSLSIDGSVA NIEGKNSFHF GVPSSTDQNS LHSKRKCPLK GDEHGSLKCG SSSRCHCAKK RKHRVRRSIR
301: VPAISNKVAD IPPDDYSWRK YGQKPIKGSP YPRGYYKCSS MRGCPARKHV ERCLEDPAML IVTYEAEHNH PKLPSQAITT
Arabidopsis Description
WRKY21Probable WRKY transcription factor 21 [Source:UniProtKB/Swiss-Prot;Acc:O04336]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.