Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G390800.1 | Wheat | nucleus | 96.5 | 97.97 |
| TraesCS5A01G381000.1 | Wheat | nucleus | 95.25 | 95.97 |
| HORVU5Hr1G094050.1 | Barley | nucleus | 93.75 | 94.94 |
| Os03t0741400-01 | Rice | nucleus | 80.25 | 82.95 |
| Zm00001d033965_P001 | Maize | nucleus | 76.5 | 77.08 |
| EER93478 | Sorghum | nucleus | 77.5 | 76.35 |
| GSMUA_Achr10P... | Banana | nucleus | 39.0 | 51.66 |
| Solyc09g066010.2.1 | Tomato | nucleus | 40.75 | 49.24 |
| Bra040396.1-P | Field mustard | nucleus | 36.75 | 48.51 |
| VIT_07s0141g00680.t01 | Wine grape | nucleus | 41.0 | 48.24 |
| CDY50747 | Canola | nucleus | 36.5 | 48.18 |
| PGSC0003DMT400038986 | Potato | nucleus | 41.5 | 47.98 |
| CDY40667 | Canola | nucleus | 37.75 | 47.48 |
| TraesCS4B01G069500.2 | Wheat | nucleus | 40.25 | 47.35 |
| KRH71315 | Soybean | nucleus | 42.0 | 47.32 |
| CDX74175 | Canola | nucleus | 37.75 | 47.04 |
| Bra001117.1-P | Field mustard | nucleus | 37.0 | 46.4 |
| TraesCS5B01G066400.1 | Wheat | nucleus | 41.0 | 46.2 |
| AT3G04670.1 | Thale cress | nucleus | 38.0 | 46.06 |
| CDY41890 | Canola | nucleus | 36.0 | 46.01 |
| KRH67313 | Soybean | nucleus | 38.5 | 45.16 |
| Solyc06g008610.2.1 | Tomato | nucleus | 39.25 | 45.11 |
| PGSC0003DMT400013632 | Potato | nucleus | 39.0 | 43.94 |
| Bra010005.1-P | Field mustard | nucleus | 37.25 | 43.7 |
| CDX86205 | Canola | nucleus | 37.25 | 43.7 |
| CDY48658 | Canola | nucleus | 36.75 | 43.62 |
| AT5G28650.1 | Thale cress | nucleus | 35.75 | 43.33 |
| CDY33884 | Canola | nucleus | 35.75 | 42.43 |
| Bra020617.1-P | Field mustard | nucleus | 35.75 | 42.43 |
| CDY05601 | Canola | nucleus | 35.5 | 42.14 |
| KRH32116 | Soybean | extracellular | 40.75 | 41.58 |
| TraesCS2B01G454300.1 | Wheat | nucleus | 26.5 | 33.87 |
| TraesCS5B01G375100.1 | Wheat | nucleus | 24.25 | 32.44 |
| TraesCS5B01G067700.1 | Wheat | nucleus | 24.0 | 32.21 |
| TraesCS1B01G455000.1 | Wheat | nucleus | 15.5 | 20.74 |
| TraesCS3B01G255400.1 | Wheat | nucleus | 15.0 | 18.81 |
| TraesCS5B01G558100.2 | Wheat | nucleus | 16.75 | 18.06 |
| TraesCS3B01G324400.1 | Wheat | nucleus | 12.5 | 17.36 |
| TraesCS1B01G212000.1 | Wheat | nucleus | 14.25 | 16.72 |
| TraesCS7B01G240000.1 | Wheat | nucleus | 14.75 | 16.67 |
| TraesCS3B01G315600.1 | Wheat | cytosol | 12.0 | 16.16 |
| TraesCS2B01G465000.1 | Wheat | nucleus | 16.0 | 12.7 |
| TraesCS6B01G294900.1 | Wheat | nucleus | 15.25 | 12.63 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR003657 | InterPro:IPR036576 | PFAM:PF03106 | PFAM:PF10533 |
| PFscan:PS50811 | PANTHER:PTHR31282 | PANTHER:PTHR31282:SF20 | SMART:SM00774 | SUPFAM:SSF118290 | EnsemblPlantsGene:TraesCS5B01G384600 |
| EnsemblPlants:TraesCS5B01G384600.1 | InterPro:WRKY_dom | InterPro:WRKY_dom_sf | InterPro:Zn-cluster-dom | SEG:seg | : |
Description
No Description!
Coordinates
chr5B:+:563332987..563334899
Molecular Weight (calculated)
42913.2 Da
IEP (calculated)
10.677
GRAVY (calculated)
-0.601
Length
400 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGMVESNRE AVQSCHKVLD LLSNPHGQLV PHKDLLEATG AAVAKFGSLA SKIGNGNGGR QGHARFRQRI KKPMPLFDSN LFRDSPASAA AADAAAAAPP
101: KTSSPGPSTS LQLFPRYQQM EASSSKDPVR IPAAQFPQRM VVENPSVGSN GPARGPPLHL VQPVSVAPPA GTPAPALPAA HLHFIQQQQS YQRFQLMHQM
201: KLQSEMMKRG GHGDHQGGST GAGKGVNLKF DGSNCTGSSS RSFLTSLSME GSMASLDGSR SSRPFQLVSG SQTSSTPEMG LMQQRRRCIG KEDGSGRCAT
301: GSRCHCAKKR KLRIRRSIKV PAISNKVADI PADEFSWRKY GQKPIKGSPH PRGYYKCSSV RGCPARKHVE RCVDDPAMLI VTYEGDHNHN RAAAAQPQPA
101: KTSSPGPSTS LQLFPRYQQM EASSSKDPVR IPAAQFPQRM VVENPSVGSN GPARGPPLHL VQPVSVAPPA GTPAPALPAA HLHFIQQQQS YQRFQLMHQM
201: KLQSEMMKRG GHGDHQGGST GAGKGVNLKF DGSNCTGSSS RSFLTSLSME GSMASLDGSR SSRPFQLVSG SQTSSTPEMG LMQQRRRCIG KEDGSGRCAT
301: GSRCHCAKKR KLRIRRSIKV PAISNKVADI PADEFSWRKY GQKPIKGSPH PRGYYKCSSV RGCPARKHVE RCVDDPAMLI VTYEGDHNHN RAAAAQPQPA
001: MEEIEGTNRA AVESCHRVLN LLHRSQQQDH VGFEKNLVSE TREAVIRFKR VGSLLSSSVG HARFRRAKKL QSHVSQSLLL DPCQQRTTEV PSSSSQKTPV
101: LRSGFQELSL RQPSDSLTLG TRSFSLNSNA KAPLLQLNQQ TMPPSNYPTL FPVQQQQQQQ QQQQQQEQQQ QQQQQQQQFH ERLQAHHLHQ QQQLQKHQAE
201: LMLRKCNGGI SLSFDNSSCT PTMSSTRSFV SSLSIDGSVA NIEGKNSFHF GVPSSTDQNS LHSKRKCPLK GDEHGSLKCG SSSRCHCAKK RKHRVRRSIR
301: VPAISNKVAD IPPDDYSWRK YGQKPIKGSP YPRGYYKCSS MRGCPARKHV ERCLEDPAML IVTYEAEHNH PKLPSQAITT
101: LRSGFQELSL RQPSDSLTLG TRSFSLNSNA KAPLLQLNQQ TMPPSNYPTL FPVQQQQQQQ QQQQQQEQQQ QQQQQQQQFH ERLQAHHLHQ QQQLQKHQAE
201: LMLRKCNGGI SLSFDNSSCT PTMSSTRSFV SSLSIDGSVA NIEGKNSFHF GVPSSTDQNS LHSKRKCPLK GDEHGSLKCG SSSRCHCAKK RKHRVRRSIR
301: VPAISNKVAD IPPDDYSWRK YGQKPIKGSP YPRGYYKCSS MRGCPARKHV ERCLEDPAML IVTYEAEHNH PKLPSQAITT
Arabidopsis Description
WRKY21Probable WRKY transcription factor 21 [Source:UniProtKB/Swiss-Prot;Acc:O04336]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.