Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G384600.1 | Wheat | nucleus | 97.97 | 96.5 |
| TraesCS5A01G381000.1 | Wheat | nucleus | 96.7 | 95.97 |
| HORVU5Hr1G094050.1 | Barley | nucleus | 94.42 | 94.18 |
| Os03t0741400-01 | Rice | nucleus | 80.71 | 82.17 |
| Zm00001d033965_P001 | Maize | nucleus | 78.68 | 78.09 |
| EER93478 | Sorghum | nucleus | 78.68 | 76.35 |
| GSMUA_Achr10P... | Banana | nucleus | 38.58 | 50.33 |
| Solyc09g066010.2.1 | Tomato | nucleus | 41.88 | 49.85 |
| PGSC0003DMT400038986 | Potato | nucleus | 42.89 | 48.84 |
| VIT_07s0141g00680.t01 | Wine grape | nucleus | 41.88 | 48.53 |
| Bra040396.1-P | Field mustard | nucleus | 37.31 | 48.51 |
| CDY50747 | Canola | nucleus | 37.06 | 48.18 |
| CDY40667 | Canola | nucleus | 38.32 | 47.48 |
| KRH71315 | Soybean | nucleus | 42.64 | 47.32 |
| TraesCS4D01G068200.1 | Wheat | nucleus | 40.86 | 47.21 |
| CDX74175 | Canola | nucleus | 38.07 | 46.73 |
| Bra001117.1-P | Field mustard | nucleus | 37.56 | 46.4 |
| TraesCS5D01G070700.1 | Wheat | nucleus | 41.88 | 46.35 |
| CDY41890 | Canola | nucleus | 36.8 | 46.33 |
| AT3G04670.1 | Thale cress | nucleus | 38.58 | 46.06 |
| KRH67313 | Soybean | nucleus | 39.59 | 45.75 |
| Solyc06g008610.2.1 | Tomato | nucleus | 40.36 | 45.69 |
| PGSC0003DMT400013632 | Potato | nucleus | 40.1 | 44.51 |
| AT5G28650.1 | Thale cress | nucleus | 36.55 | 43.64 |
| Bra010005.1-P | Field mustard | nucleus | 37.56 | 43.4 |
| CDX86205 | Canola | nucleus | 37.56 | 43.4 |
| CDY48658 | Canola | nucleus | 37.06 | 43.32 |
| Bra020617.1-P | Field mustard | nucleus | 36.8 | 43.03 |
| CDY33884 | Canola | nucleus | 36.8 | 43.03 |
| CDY05601 | Canola | nucleus | 36.55 | 42.73 |
| KRH32116 | Soybean | extracellular | 40.86 | 41.07 |
| TraesCS2D01G269200.1 | Wheat | nucleus | 27.16 | 34.19 |
| TraesCS2D01G431000.1 | Wheat | nucleus | 27.41 | 33.33 |
| TraesCS5D01G071800.1 | Wheat | nucleus | 24.37 | 32.43 |
| TraesCS5D01G382600.1 | Wheat | nucleus | 24.62 | 32.33 |
| TraesCS5D01G451000.1 | Wheat | nucleus | 31.98 | 26.2 |
| TraesCS1D01G431600.1 | Wheat | nucleus | 15.48 | 20.68 |
| TraesCS4D01G320200.1 | Wheat | nucleus | 13.96 | 19.64 |
| TraesCS3D01G227400.1 | Wheat | nucleus | 15.48 | 19.06 |
| TraesCS5D01G564500.2 | Wheat | nucleus | 16.75 | 18.03 |
| TraesCS3D01G289500.1 | Wheat | nucleus | 12.69 | 17.79 |
| TraesCS4D01G320000.1 | Wheat | nucleus | 12.94 | 17.11 |
| TraesCS1D01G200900.1 | Wheat | nucleus | 14.47 | 16.76 |
| TraesCS7D01G336400.1 | Wheat | nucleus | 14.97 | 16.57 |
| TraesCS3D01G281900.1 | Wheat | nucleus, plastid | 12.18 | 16.11 |
| TraesCS6D01G247200.1 | Wheat | nucleus | 15.48 | 12.68 |
| TraesCS2D01G443000.1 | Wheat | nucleus | 16.24 | 12.57 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR003657 | InterPro:IPR036576 | PFAM:PF03106 | PFAM:PF10533 |
| PFscan:PS50811 | PANTHER:PTHR31282 | PANTHER:PTHR31282:SF20 | SMART:SM00774 | SUPFAM:SSF118290 | EnsemblPlantsGene:TraesCS5D01G390800 |
| EnsemblPlants:TraesCS5D01G390800.1 | InterPro:WRKY_dom | InterPro:WRKY_dom_sf | InterPro:Zn-cluster-dom | SEG:seg | : |
Description
No Description!
Coordinates
chr5D:+:459208386..459210288
Molecular Weight (calculated)
42283.4 Da
IEP (calculated)
10.616
GRAVY (calculated)
-0.594
Length
394 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGMVESNRE AVQSCHKVLD LLSNPHGQLV PHKDLVEATG AAVAKFGSLA SKISSGNGRQ GHARFRQRIK KPMPLFDSNL FRDSPASASA ADAAAAAPKT
101: SSPGPSTGLQ LFPRYQQMEA SSSKDPVRIP AAQFPQRMVV ENPSVGSNGP PLQLVQPVSV APPAGTPAPA LPAAHLHFIQ QQQSYQRFQL MHQMKLQSEM
201: MKRGGHGDHQ GGSTGAGKGV NLKFDGSNCT GSSSRSFLTS LSMEGSMASL DGSRSSRPFQ LVSGSQTSST PELGLMQQRR RCAGKEDGSG RCATGSRCHC
301: AKKRKLRIRR SIKVPAISNK VADIPADEFS WRKYGQKPIK GSPHPRGYYK CSSVRGCPAR KHVERCVDDP AMLIVTYEGD HNHNRAAAAQ PQPA
101: SSPGPSTGLQ LFPRYQQMEA SSSKDPVRIP AAQFPQRMVV ENPSVGSNGP PLQLVQPVSV APPAGTPAPA LPAAHLHFIQ QQQSYQRFQL MHQMKLQSEM
201: MKRGGHGDHQ GGSTGAGKGV NLKFDGSNCT GSSSRSFLTS LSMEGSMASL DGSRSSRPFQ LVSGSQTSST PELGLMQQRR RCAGKEDGSG RCATGSRCHC
301: AKKRKLRIRR SIKVPAISNK VADIPADEFS WRKYGQKPIK GSPHPRGYYK CSSVRGCPAR KHVERCVDDP AMLIVTYEGD HNHNRAAAAQ PQPA
001: MEEIEGTNRA AVESCHRVLN LLHRSQQQDH VGFEKNLVSE TREAVIRFKR VGSLLSSSVG HARFRRAKKL QSHVSQSLLL DPCQQRTTEV PSSSSQKTPV
101: LRSGFQELSL RQPSDSLTLG TRSFSLNSNA KAPLLQLNQQ TMPPSNYPTL FPVQQQQQQQ QQQQQQEQQQ QQQQQQQQFH ERLQAHHLHQ QQQLQKHQAE
201: LMLRKCNGGI SLSFDNSSCT PTMSSTRSFV SSLSIDGSVA NIEGKNSFHF GVPSSTDQNS LHSKRKCPLK GDEHGSLKCG SSSRCHCAKK RKHRVRRSIR
301: VPAISNKVAD IPPDDYSWRK YGQKPIKGSP YPRGYYKCSS MRGCPARKHV ERCLEDPAML IVTYEAEHNH PKLPSQAITT
101: LRSGFQELSL RQPSDSLTLG TRSFSLNSNA KAPLLQLNQQ TMPPSNYPTL FPVQQQQQQQ QQQQQQEQQQ QQQQQQQQFH ERLQAHHLHQ QQQLQKHQAE
201: LMLRKCNGGI SLSFDNSSCT PTMSSTRSFV SSLSIDGSVA NIEGKNSFHF GVPSSTDQNS LHSKRKCPLK GDEHGSLKCG SSSRCHCAKK RKHRVRRSIR
301: VPAISNKVAD IPPDDYSWRK YGQKPIKGSP YPRGYYKCSS MRGCPARKHV ERCLEDPAML IVTYEAEHNH PKLPSQAITT
Arabidopsis Description
WRKY21Probable WRKY transcription factor 21 [Source:UniProtKB/Swiss-Prot;Acc:O04336]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.