Factsheet for GSMUA_Achr10P08720_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr2P01120_001
GSMUA_Achr3P09330_001
GSMUA_Achr3P25040_001
GSMUA_Achr5P07820_001
GSMUA_Achr5P27590_001
GSMUA_Achr6P15990_001
GSMUA_Achr6P23670_001
GSMUA_Achr8P05790_001
GSMUA_Achr9P17280_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04670.1	GSMUA_Achr10P...	AT3G56800.1	15733871
AT3G04670.1	GSMUA_Achr10P...	AT3G56800.1	15733871
AT3G04670.1	GSMUA_Achr10P...	AT3G56800.1	15733871
AT3G04670.1	GSMUA_Achr10P...	AT3G56800.1	15733871
AT3G04670.1	GSMUA_Achr11P...	AT3G56800.1	15733871
AT3G04670.1	GSMUA_Achr2P01120_001	AT3G56800.1	15733871
AT3G04670.1	GSMUA_Achr3P09330_001	AT3G56800.1	15733871
AT3G04670.1	GSMUA_Achr3P25040_001	AT3G56800.1	15733871
AT3G04670.1	GSMUA_Achr5P07820_001	AT3G56800.1	15733871
AT3G04670.1	GSMUA_Achr5P27590_001	AT3G56800.1	15733871
AT3G04670.1	GSMUA_Achr6P15990_001	AT3G56800.1	15733871
AT3G04670.1	GSMUA_Achr6P23670_001	AT3G56800.1	15733871
AT3G04670.1	GSMUA_Achr8P05790_001	AT3G56800.1	15733871
AT3G04670.1	GSMUA_Achr9P17280_001	AT3G56800.1	15733871
AT5G28650.1	GSMUA_Achr10P...	AT3G56800.1	15733871
AT5G28650.1	GSMUA_Achr10P...	AT3G56800.1	15733871
AT5G28650.1	GSMUA_Achr10P...	AT3G56800.1	15733871
AT5G28650.1	GSMUA_Achr10P...	AT3G56800.1	15733871
AT5G28650.1	GSMUA_Achr11P...	AT3G56800.1	15733871
AT5G28650.1	GSMUA_Achr2P01120_001	AT3G56800.1	15733871
AT5G28650.1	GSMUA_Achr3P09330_001	AT3G56800.1	15733871
AT5G28650.1	GSMUA_Achr3P25040_001	AT3G56800.1	15733871
AT5G28650.1	GSMUA_Achr5P07820_001	AT3G56800.1	15733871
AT5G28650.1	GSMUA_Achr5P27590_001	AT3G56800.1	15733871
AT5G28650.1	GSMUA_Achr6P15990_001	AT3G56800.1	15733871
AT5G28650.1	GSMUA_Achr6P23670_001	AT3G56800.1	15733871
AT5G28650.1	GSMUA_Achr8P05790_001	AT3G56800.1	15733871
AT5G28650.1	GSMUA_Achr9P17280_001	AT3G56800.1	15733871

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P10740_001	Banana	nucleus	65.23	76.95
GSMUA_Achr8P20660_001	Banana	nucleus	60.93	72.73
GSMUA_Achr4P03660_001	Banana	nucleus	54.97	61.48
GSMUA_Achr3P29310_001	Banana	nucleus	54.64	59.57
VIT_07s0141g00680.t01	Wine grape	nucleus	61.92	55.0
Solyc09g066010.2.1	Tomato	nucleus	60.26	54.98
PGSC0003DMT400038986	Potato	nucleus	60.6	52.89
KRH71315	Soybean	nucleus	61.59	52.39
TraesCS4B01G069500.2	Wheat	nucleus	57.95	51.47
EER91209	Sorghum	nucleus	59.6	51.14
TraesCS4D01G068200.1	Wheat	nucleus	57.62	51.03
TraesCS4A01G246000.2	Wheat	nucleus	58.94	51.0
KRH67313	Soybean	nucleus	57.28	50.73
Bra040396.1-P	Field mustard	nucleus	50.66	50.49
CDY50747	Canola	nucleus	50.33	50.16
Zm00001d033291_P007	Maize	nucleus	58.61	50.0
Os12t0597700-01	Rice	nucleus	59.93	49.86
Solyc06g008610.2.1	Tomato	nucleus	56.95	49.43
EES17321	Sorghum	nucleus	60.6	49.33
TraesCS5B01G066400.1	Wheat	nucleus	57.95	49.3
TraesCS5D01G070700.1	Wheat	nucleus	57.95	49.16
TraesCS5A01G059100.1	Wheat	nucleus	57.62	49.01
CDX74175	Canola	nucleus	51.99	48.91
Zm00001d041397_P001	Maize	nucleus	59.27	48.77
Bra001117.1-P	Field mustard	nucleus	51.32	48.59
PGSC0003DMT400013632	Potato	nucleus	56.95	48.45
CDY40667	Canola	nucleus	50.99	48.43
GSMUA_Achr2P17580_001	Banana	nucleus	48.01	48.33
CDY41890	Canola	nucleus	50.0	48.24
AT3G04670.1	Thale cress	nucleus	52.65	48.18
Zm00001d030969_P001	Maize	nucleus	59.27	47.86
AT5G28650.1	Thale cress	nucleus	51.32	46.97
Zm00001d013709_P003	Maize	nucleus	57.28	46.88
GSMUA_Achr9P21560_001	Banana	nucleus	55.63	46.03
CDY48658	Canola	nucleus	50.99	45.7
KRH32116	Soybean	extracellular	59.27	45.66
Bra010005.1-P	Field mustard	nucleus	50.99	45.16
CDX86205	Canola	nucleus	50.99	45.16
Bra020617.1-P	Field mustard	nucleus	50.33	45.1
CDY05601	Canola	nucleus	50.33	45.1
CDY33884	Canola	nucleus	50.33	45.1
HORVU4Hr1G011590.2	Barley	nucleus, plastid	58.28	42.72
Os03t0741400-01	Rice	nucleus	53.97	42.12
Zm00001d013307_P003	Maize	nucleus	54.97	42.03
Zm00001d033965_P001	Maize	nucleus	54.97	41.81
EER93478	Sorghum	nucleus	53.31	39.66
GSMUA_Achr7P15930_001	Banana	nucleus	36.76	39.36
TraesCS5B01G384600.1	Wheat	nucleus	51.66	39.0
GSMUA_Achr4P20600_001	Banana	nucleus	36.09	38.65
TraesCS5D01G390800.1	Wheat	nucleus	50.33	38.58
TraesCS5A01G381000.1	Wheat	nucleus	50.33	38.29
GSMUA_Achr3P00510_001	Banana	nucleus	33.44	38.26
GSMUA_Achr10P...	Banana	nucleus	33.77	38.2
GSMUA_Achr5P21910_001	Banana	nucleus	32.12	38.04
HORVU5Hr1G094050.1	Barley	nucleus	49.34	37.72
GSMUA_Achr3P05670_001	Banana	nucleus	34.44	37.68
GSMUA_Achr6P03810_001	Banana	nucleus	31.46	36.97
GSMUA_Achr1P23560_001	Banana	nucleus	36.42	36.3
GSMUA_Achr9P22950_001	Banana	nucleus	33.44	35.94
GSMUA_Achr5P04870_001	Banana	nucleus	35.1	35.57
GSMUA_Achr3P27880_001	Banana	nucleus	29.8	32.73
GSMUA_Achr5P20810_001	Banana	nucleus	27.81	30.32
GSMUA_Achr7P24840_001	Banana	nucleus	18.21	22.18
GSMUA_Achr3P15690_001	Banana	nucleus	18.21	21.65
GSMUA_Achr4P08360_001	Banana	nucleus	17.88	20.93
GSMUA_Achr8P27790_001	Banana	nucleus	15.89	19.83
GSMUA_Achr4P15540_001	Banana	nucleus	18.21	19.23
GSMUA_Achr7P14300_001	Banana	nucleus	19.21	18.65
GSMUA_Achr10P...	Banana	nucleus	17.88	18.0
GSMUA_Achr11P...	Banana	nucleus	23.18	17.86
GSMUA_Achr10P...	Banana	nucleus	17.88	17.7
GSMUA_Achr5P09430_001	Banana	nucleus	19.21	17.06
GSMUA_Achr5P03670_001	Banana	nucleus	18.87	16.81
GSMUA_Achr9P05460_001	Banana	nucleus	19.87	16.48
GSMUA_Achr8P19810_001	Banana	nucleus	18.21	15.71
GSMUA_Achr8P14610_001	Banana	nucleus	19.54	15.32
GSMUA_Achr4P27420_001	Banana	nucleus	18.21	14.99
GSMUA_Achr11P...	Banana	nucleus	17.88	14.56
GSMUA_Achr6P31840_001	Banana	nucleus	18.54	14.55
GSMUA_Achr9P03020_001	Banana	nucleus	19.54	14.36
GSMUA_Achr1P05010_001	Banana	nucleus	17.22	14.09
GSMUA_Achr2P09710_001	Banana	nucleus	18.54	12.02
GSMUA_Achr10P...	Banana	plastid	16.56	11.14

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr10G08720_001	EnsemblPlants:GSMUA_Achr10P08720_001	EnsemblPlants:GSMUA_Achr10T08720_001	InterPro:IPR003657	InterPro:IPR036576
UniProt:M0RGJ8	PFAM:PF03106	PFAM:PF10533	PFscan:PS50811	PANTHER:PTHR31282	PANTHER:PTHR31282:SF12
SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI000295BC76	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	InterPro:Zn-cluster-dom
SEG:seg	:	:	:	:	:

Description

Putative Probable WRKY transcription factor 39 [Source:GMGC_GENE;Acc:GSMUA_Achr10G08720_001]

Coordinates

chr10:+:18636237..18638518

Molecular Weight (calculated)

33914.7 Da

IEP (calculated)

10.089

GRAVY (calculated)

-0.608

Length

302 amino acids

Sequence
(BLAST)

001: MEEVEKANRA AVESCHRILS LLSQPQDQVL SQDLLVETKE AVSRFRRLVS LLGNSIGHGR VRMVHKVQYP TNHKIFSDNH SVLQIDLAPN PLQLLPRNII
101: ENNIQVLDSK NDQRFQLHHQ KCQPDMFTRS HSAINLKFES SNCIPSLSST RSFLSSLSMD RSVASLDGKP FHPIGGLAAS SVHPPPKRRC ICRGVDGDGK
201: CATSQRCHCS KRRKLRVKRS IKVPAISNKP ADTPPDEYSW RKYGQKPIKG SPHPRGYYKC SSIRGCPARK QVERCLEDPS MLIVTYEGEH NHAGLLTQSA
301: QT

Best Arabidopsis Sequence Match ( AT3G04670.1 )
(BLAST)

001: MEEVEAANRS AIESCHGVLN LLSQRTSDPK SLTVETGEVV SKFKRVASLL TRGLGHGKFR STNKFRSSFP QHIFLESPIC CGNDLSGDYT QVLAPEPLQM
101: VPASAVYNEM EPKHQLGHPS LMLSHKMCVD KSFLELKPPP FRAPYQLIHN HQQIAYSRSN SGVNLKFDGS GSSCYTPSVS NGSRSFVSSL SMDASVTDYD
201: RNSFHLTGLS RGSDQQHTRK MCSGSLKCGS RSKCHCSKKR KLRVKRSIKV PAISNKIADI PPDEYSWRKY GQKPIKGSPH PRGYYKCSSV RGCPARKHVE
301: RCIDETSMLI VTYEGEHNHS RILSSQSAHT

Arabidopsis Description

WRKY39Probable WRKY transcription factor 39 [Source:UniProtKB/Swiss-Prot;Acc:Q9SR07]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.