Factsheet for GSMUA_Achr4P20600_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr2P01120_001
GSMUA_Achr3P09330_001
GSMUA_Achr3P25040_001
GSMUA_Achr5P07820_001
GSMUA_Achr5P27590_001
GSMUA_Achr6P15990_001
GSMUA_Achr6P23670_001
GSMUA_Achr8P05790_001
GSMUA_Achr8P19010_001
GSMUA_Achr9P17280_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24570.1	GSMUA_Achr10P...	AT3G56800.1	15733871
AT2G24570.1	GSMUA_Achr10P...	AT3G56800.1	15733871
AT2G24570.1	GSMUA_Achr10P...	AT3G56800.1	15733871
AT2G24570.1	GSMUA_Achr10P...	AT3G56800.1	15733871
AT2G24570.1	GSMUA_Achr11P...	AT3G56800.1	15733871
AT2G24570.1	GSMUA_Achr2P01120_001	AT3G56800.1	15733871
AT2G24570.1	GSMUA_Achr3P09330_001	AT3G56800.1	15733871
AT2G24570.1	GSMUA_Achr3P25040_001	AT3G56800.1	15733871
AT2G24570.1	GSMUA_Achr5P07820_001	AT3G56800.1	15733871
AT2G24570.1	GSMUA_Achr5P27590_001	AT3G56800.1	15733871
AT2G24570.1	GSMUA_Achr6P15990_001	AT3G56800.1	15733871
AT2G24570.1	GSMUA_Achr6P23670_001	AT3G56800.1	15733871
AT2G24570.1	GSMUA_Achr8P05790_001	AT3G56800.1	15733871
AT2G24570.1	GSMUA_Achr9P17280_001	AT3G56800.1	15733871
AT2G24570.1	GSMUA_Achr11P...	AT5G28900.1	21798944
AT2G24570.1	GSMUA_Achr8P19010_001	AT5G28900.1	21798944
AT2G24570.1	GSMUA_AchrUn_...	AT5G28900.1	21798944
AT4G31550.1	GSMUA_Achr10P...	AT3G56800.1	15733871
AT4G31550.1	GSMUA_Achr10P...	AT3G56800.1	15733871
AT4G31550.1	GSMUA_Achr10P...	AT3G56800.1	15733871
AT4G31550.1	GSMUA_Achr10P...	AT3G56800.1	15733871
AT4G31550.1	GSMUA_Achr11P...	AT3G56800.1	15733871
AT4G31550.1	GSMUA_Achr2P01120_001	AT3G56800.1	15733871
AT4G31550.1	GSMUA_Achr3P09330_001	AT3G56800.1	15733871
AT4G31550.1	GSMUA_Achr3P25040_001	AT3G56800.1	15733871
AT4G31550.1	GSMUA_Achr5P07820_001	AT3G56800.1	15733871
AT4G31550.1	GSMUA_Achr5P27590_001	AT3G56800.1	15733871
AT4G31550.1	GSMUA_Achr6P15990_001	AT3G56800.1	15733871
AT4G31550.1	GSMUA_Achr6P23670_001	AT3G56800.1	15733871
AT4G31550.1	GSMUA_Achr8P05790_001	AT3G56800.1	15733871
AT4G31550.1	GSMUA_Achr9P17280_001	AT3G56800.1	15733871

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P00510_001	Banana	nucleus	61.7	65.91
GSMUA_Achr1P23560_001	Banana	nucleus	66.31	61.72
GSMUA_Achr9P22950_001	Banana	nucleus	56.74	56.94
GSMUA_Achr5P21910_001	Banana	nucleus	50.71	56.08
GSMUA_Achr7P15930_001	Banana	nucleus	55.32	55.32
GSMUA_Achr10P...	Banana	nucleus	51.06	53.93
GSMUA_Achr3P05670_001	Banana	nucleus	51.06	52.17
GSMUA_Achr6P03810_001	Banana	nucleus	46.81	51.36
GSMUA_Achr5P04870_001	Banana	nucleus	54.26	51.34
CDY20325	Canola	nucleus	50.0	49.82
CDX72310	Canola	nucleus	49.65	49.3
CDY60852	Canola	nucleus	50.71	47.99
CDY36432	Canola	nucleus	47.87	47.87
GSMUA_Achr3P27880_001	Banana	nucleus	46.45	47.64
CDY13441	Canola	nucleus	48.58	46.76
CDX68763	Canola	nucleus	49.29	46.64
Bra011282.1-P	Field mustard	nucleus	52.13	45.65
CDY23304	Canola	nucleus	49.29	45.42
AT4G31550.1	Thale cress	nucleus	51.42	44.62
CDY45583	Canola	nucleus	51.42	44.62
Bra032084.1-P	Field mustard	nucleus	50.71	44.0
AT2G24570.1	Thale cress	nucleus	50.0	43.93
Bra023998.1-P	Field mustard	nucleus	51.06	43.9
GSMUA_Achr4P03660_001	Banana	nucleus	41.84	43.7
PGSC0003DMT400075531	Potato	nucleus	48.23	43.59
GSMUA_Achr8P20660_001	Banana	nucleus	39.01	43.48
Bra010231.1-P	Field mustard	nucleus	51.06	43.37
GSMUA_Achr3P29310_001	Banana	nucleus	42.2	42.96
GSMUA_Achr9P10740_001	Banana	nucleus	38.3	42.19
PGSC0003DMT400024632	Potato	nucleus	49.29	41.62
Solyc08g006320.2.1	Tomato	nucleus	47.87	41.16
Solyc12g096350.1.1	Tomato	nucleus	45.39	37.87
GSMUA_Achr10P...	Banana	nucleus	38.65	36.09
GSMUA_Achr5P20810_001	Banana	nucleus	31.91	32.49
GSMUA_Achr9P21560_001	Banana	nucleus	40.07	30.96
GSMUA_Achr2P17580_001	Banana	nucleus	32.27	30.33
GSMUA_Achr10P...	Banana	nucleus	21.99	20.67
GSMUA_Achr3P15690_001	Banana	nucleus	18.44	20.47
GSMUA_Achr7P24840_001	Banana	nucleus	17.38	19.76
GSMUA_Achr7P14300_001	Banana	nucleus	21.63	19.61
GSMUA_Achr8P27790_001	Banana	nucleus	16.67	19.42
GSMUA_Achr10P...	Banana	nucleus	20.92	19.34
GSMUA_Achr4P08360_001	Banana	nucleus	17.38	18.99
GSMUA_Achr5P09430_001	Banana	nucleus	21.28	17.65
GSMUA_Achr8P19810_001	Banana	nucleus	21.63	17.43
GSMUA_Achr5P03670_001	Banana	nucleus	20.92	17.4
GSMUA_Achr9P05460_001	Banana	nucleus	21.99	17.03
GSMUA_Achr4P15540_001	Banana	nucleus	17.02	16.78
GSMUA_Achr4P27420_001	Banana	nucleus	21.63	16.62
GSMUA_Achr11P...	Banana	nucleus	22.7	16.33
GSMUA_Achr11P...	Banana	nucleus	20.92	15.9
GSMUA_Achr8P14610_001	Banana	nucleus	21.63	15.84
GSMUA_Achr1P05010_001	Banana	nucleus	20.21	15.45
GSMUA_Achr6P31840_001	Banana	nucleus	20.21	14.81
GSMUA_Achr9P03020_001	Banana	nucleus	21.28	14.6
GSMUA_Achr10P...	Banana	plastid	20.92	13.14
GSMUA_Achr2P09710_001	Banana	nucleus	21.28	12.88

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr4G20600_001	EnsemblPlants:GSMUA_Achr4P20600_001	EnsemblPlants:GSMUA_Achr4T20600_001	InterPro:IPR003657	InterPro:IPR036576
UniProt:M0SQM3	PFAM:PF03106	PFAM:PF10533	PFscan:PS50811	PANTHER:PTHR31282	PANTHER:PTHR31282:SF32
SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI00029655E1	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	InterPro:Zn-cluster-dom
SEG:seg	:	:	:	:	:

Description

Putative Probable WRKY transcription factor 11 [Source:GMGC_GENE;Acc:GSMUA_Achr4G20600_001]

Coordinates

chr4:+:21190101..21191403

Molecular Weight (calculated)

30814.5 Da

IEP (calculated)

9.878

GRAVY (calculated)

-0.648

Length

282 amino acids

Sequence
(BLAST)

001: MTAADLMSRQ KMDELVAIQE AAAAGVRSIE HLVSRLSRQS SPSDCREITD LTVSKFRKVI SVLDRTGHAR FRRGPMLATT DATEDKTLSL LPQPFESQPQ
101: PNLPVASKGL TMDFTEAKGE PAATTLSLGF SASTTMSSGN SSFLSSLTGD GSPPLSSSHK RKSPGDCHDR VHCDVALRKH SGDLCHCSSK KKKTRVKRTI
201: RVPATSLRNA DIPSDEYSWR KYGQKPIKGS PYPRGYYKCS SMRGCPARKH VERAPDDPSM LIVTYEGEHR HASNPEPIST GA

Best Arabidopsis Sequence Match ( AT2G23320.1 )
(BLAST)

001: MAVELMTRNY ISGVGADSFA VQEAAASGLK SIENFIGLMS RDSFNSDQPS SSSASASASA AADLESARNT TADAAVSKFK RVISLLDRTR TGHARFRRAP
101: VHVISPVLLQ EEPKTTPFQS PLPPPPQMIR KGSFSSSMKT IDFSSLSSVT TESDNQKKIH HHQRPSETAP FASQTQSLST TVSSFSKSTK RKCNSENLLT
201: GKCASASSSG RCHCSKKRKI KQRRIIRVPA ISAKMSDVPP DDYSWRKYGQ KPIKGSPHPR GYYKCSSVRG CPARKHVERA ADDSSMLIVT YEGDHNHSLS
301: AADLAGAAVA DLILESS

Arabidopsis Description

WRKY15Probable WRKY transcription factor 15 [Source:UniProtKB/Swiss-Prot;Acc:O22176]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.