Factsheet for GSMUA_Achr5P21910_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr2P01120_001
GSMUA_Achr3P09330_001
GSMUA_Achr3P25040_001
GSMUA_Achr5P07820_001
GSMUA_Achr5P27590_001
GSMUA_Achr6P15990_001
GSMUA_Achr6P23670_001
GSMUA_Achr8P05790_001
GSMUA_Achr8P19010_001
GSMUA_Achr9P17280_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24570.1	GSMUA_Achr10P...	AT3G56800.1	15733871
AT2G24570.1	GSMUA_Achr10P...	AT3G56800.1	15733871
AT2G24570.1	GSMUA_Achr10P...	AT3G56800.1	15733871
AT2G24570.1	GSMUA_Achr10P...	AT3G56800.1	15733871
AT2G24570.1	GSMUA_Achr11P...	AT3G56800.1	15733871
AT2G24570.1	GSMUA_Achr2P01120_001	AT3G56800.1	15733871
AT2G24570.1	GSMUA_Achr3P09330_001	AT3G56800.1	15733871
AT2G24570.1	GSMUA_Achr3P25040_001	AT3G56800.1	15733871
AT2G24570.1	GSMUA_Achr5P07820_001	AT3G56800.1	15733871
AT2G24570.1	GSMUA_Achr5P27590_001	AT3G56800.1	15733871
AT2G24570.1	GSMUA_Achr6P15990_001	AT3G56800.1	15733871
AT2G24570.1	GSMUA_Achr6P23670_001	AT3G56800.1	15733871
AT2G24570.1	GSMUA_Achr8P05790_001	AT3G56800.1	15733871
AT2G24570.1	GSMUA_Achr9P17280_001	AT3G56800.1	15733871
AT2G24570.1	GSMUA_Achr11P...	AT5G28900.1	21798944
AT2G24570.1	GSMUA_Achr8P19010_001	AT5G28900.1	21798944
AT2G24570.1	GSMUA_AchrUn_...	AT5G28900.1	21798944
AT4G31550.1	GSMUA_Achr10P...	AT3G56800.1	15733871
AT4G31550.1	GSMUA_Achr10P...	AT3G56800.1	15733871
AT4G31550.1	GSMUA_Achr10P...	AT3G56800.1	15733871
AT4G31550.1	GSMUA_Achr10P...	AT3G56800.1	15733871
AT4G31550.1	GSMUA_Achr11P...	AT3G56800.1	15733871
AT4G31550.1	GSMUA_Achr2P01120_001	AT3G56800.1	15733871
AT4G31550.1	GSMUA_Achr3P09330_001	AT3G56800.1	15733871
AT4G31550.1	GSMUA_Achr3P25040_001	AT3G56800.1	15733871
AT4G31550.1	GSMUA_Achr5P07820_001	AT3G56800.1	15733871
AT4G31550.1	GSMUA_Achr5P27590_001	AT3G56800.1	15733871
AT4G31550.1	GSMUA_Achr6P15990_001	AT3G56800.1	15733871
AT4G31550.1	GSMUA_Achr6P23670_001	AT3G56800.1	15733871
AT4G31550.1	GSMUA_Achr8P05790_001	AT3G56800.1	15733871
AT4G31550.1	GSMUA_Achr9P17280_001	AT3G56800.1	15733871

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P15930_001	Banana	nucleus	68.63	62.06
GSMUA_Achr6P03810_001	Banana	nucleus	61.96	61.48
GSMUA_Achr3P05670_001	Banana	nucleus	61.18	56.52
GSMUA_Achr10P...	Banana	nucleus	58.82	56.18
GSMUA_Achr5P04870_001	Banana	nucleus	62.75	53.69
CDX72310	Canola	nucleus	58.04	52.11
CDY20325	Canola	nucleus	57.65	51.94
GSMUA_Achr3P00510_001	Banana	nucleus	52.55	50.76
GSMUA_Achr4P20600_001	Banana	nucleus	56.08	50.71
CDY13441	Canola	nucleus	57.25	49.83
Os04t0287400-01	Rice	nucleus	63.14	49.39
CDY36432	Canola	nucleus	54.12	48.94
TraesCS2D01G269200.1	Wheat	nucleus	60.0	48.88
CDY60852	Canola	nucleus	56.47	48.32
TraesCS2A01G270200.2	Wheat	nucleus	60.0	47.81
GSMUA_Achr9P22950_001	Banana	nucleus	52.16	47.33
GSMUA_Achr1P23560_001	Banana	nucleus	56.08	47.19
CDX68763	Canola	nucleus	54.51	46.64
Bra011282.1-P	Field mustard	nucleus	58.82	46.58
Zm00001d004086_P001	Maize	nucleus	60.39	46.53
GSMUA_Achr3P27880_001	Banana	nucleus	49.8	46.18
AT4G31550.1	Thale cress	nucleus	58.43	45.85
AT2G24570.1	Thale cress	nucleus	57.65	45.79
CDY45583	Canola	nucleus	57.65	45.23
Bra023998.1-P	Field mustard	nucleus	58.04	45.12
CDY23304	Canola	nucleus	53.73	44.77
Bra032084.1-P	Field mustard	nucleus	56.86	44.62
PGSC0003DMT400075531	Potato	nucleus	54.12	44.23
Bra010231.1-P	Field mustard	nucleus	56.47	43.37
PGSC0003DMT400024632	Potato	nucleus	53.33	40.72
Solyc08g006320.2.1	Tomato	nucleus	52.16	40.55
GSMUA_Achr8P20660_001	Banana	nucleus	39.22	39.53
Solyc12g096350.1.1	Tomato	nucleus	51.37	38.76
GSMUA_Achr4P03660_001	Banana	nucleus	40.78	38.52
GSMUA_Achr9P10740_001	Banana	nucleus	38.43	38.28
GSMUA_Achr3P29310_001	Banana	nucleus	40.0	36.82
GSMUA_Achr10P...	Banana	nucleus	38.04	32.12
GSMUA_Achr5P20810_001	Banana	nucleus	32.94	30.32
GSMUA_Achr2P17580_001	Banana	nucleus	33.33	28.33
GSMUA_Achr9P21560_001	Banana	nucleus	40.39	28.22
GSMUA_Achr7P24840_001	Banana	nucleus	20.0	20.56
GSMUA_Achr3P15690_001	Banana	nucleus	20.0	20.08
GSMUA_Achr4P08360_001	Banana	nucleus	20.0	19.77
GSMUA_Achr10P...	Banana	nucleus	23.14	19.67
GSMUA_Achr7P14300_001	Banana	nucleus	23.92	19.61
GSMUA_Achr10P...	Banana	nucleus	22.35	18.69
GSMUA_Achr8P27790_001	Banana	nucleus	16.86	17.77
GSMUA_Achr5P09430_001	Banana	nucleus	23.53	17.65
GSMUA_Achr8P19810_001	Banana	nucleus	23.92	17.43
GSMUA_Achr4P15540_001	Banana	nucleus	19.22	17.13
GSMUA_Achr5P03670_001	Banana	nucleus	22.75	17.11
GSMUA_Achr4P27420_001	Banana	nucleus	23.53	16.35
GSMUA_Achr9P05460_001	Banana	nucleus	23.14	16.21
GSMUA_Achr11P...	Banana	nucleus	24.71	16.07
GSMUA_Achr1P05010_001	Banana	nucleus	23.14	15.99
GSMUA_Achr8P14610_001	Banana	nucleus	23.53	15.58
GSMUA_Achr6P31840_001	Banana	nucleus	23.53	15.58
GSMUA_Achr11P...	Banana	nucleus	21.96	15.09
GSMUA_Achr9P03020_001	Banana	nucleus	24.31	15.09
GSMUA_Achr10P...	Banana	plastid	22.75	12.92
GSMUA_Achr2P09710_001	Banana	nucleus	23.14	12.66

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003682
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009737	GO:GO:0009739	GO:GO:0009938
GO:GO:0009987	GO:GO:0043565	GO:GO:1990841	EnsemblPlantsGene:GSMUA_Achr5G21910_001	EnsemblPlants:GSMUA_Achr5P21910_001	EnsemblPlants:GSMUA_Achr5T21910_001
InterPro:IPR003657	InterPro:IPR036576	UniProt:M0T0L6	PFAM:PF03106	PFAM:PF10533	PFscan:PS50811
PANTHER:PTHR31282	PANTHER:PTHR31282:SF18	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI0002962D99	InterPro:WRKY_dom
InterPro:WRKY_dom_sf	InterPro:Zn-cluster-dom	SEG:seg	:	:	:

Description

Putative Probable WRKY transcription factor 11 [Source:GMGC_GENE;Acc:GSMUA_Achr5G21910_001]

Coordinates

chr5:+:24048779..24049935

Molecular Weight (calculated)

28168.0 Da

IEP (calculated)

10.428

GRAVY (calculated)

-0.447

Length

255 amino acids

Sequence
(BLAST)

001: MAVDLVGYTK MDDRIAIQEA TAAGLRSMEH LIRHLSNPHR HQQQQLDCHE IADFAISKFK KVIAILDGTG HARFRRGPVA PVPLAEPSLP AAAKSLTLAP
101: IPLRLPPPTR YGKEYFSISM PMTSATSSFV SSVTRDCSHS HAHSDHVAGK NAVPGTRCHC SKRRKPRVKR TIRVPAVGLK AADIPADEYS WRKYGQKPIK
201: GSPYPRQGLV LRTGYYKCST LRGCPARKHV ERAPDDPSML IVTYEGEHRH SAAAI

Best Arabidopsis Sequence Match ( AT2G23320.1 )
(BLAST)

001: MAVELMTRNY ISGVGADSFA VQEAAASGLK SIENFIGLMS RDSFNSDQPS SSSASASASA AADLESARNT TADAAVSKFK RVISLLDRTR TGHARFRRAP
101: VHVISPVLLQ EEPKTTPFQS PLPPPPQMIR KGSFSSSMKT IDFSSLSSVT TESDNQKKIH HHQRPSETAP FASQTQSLST TVSSFSKSTK RKCNSENLLT
201: GKCASASSSG RCHCSKKRKI KQRRIIRVPA ISAKMSDVPP DDYSWRKYGQ KPIKGSPHPR GYYKCSSVRG CPARKHVERA ADDSSMLIVT YEGDHNHSLS
301: AADLAGAAVA DLILESS

Arabidopsis Description

WRKY15Probable WRKY transcription factor 15 [Source:UniProtKB/Swiss-Prot;Acc:O22176]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.