Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P21910_001 | Banana | nucleus | 61.48 | 61.96 |
| GSMUA_Achr7P15930_001 | Banana | nucleus | 59.53 | 54.26 |
| GSMUA_Achr10P... | Banana | nucleus | 54.09 | 52.06 |
| GSMUA_Achr3P05670_001 | Banana | nucleus | 50.97 | 47.46 |
| GSMUA_Achr4P20600_001 | Banana | nucleus | 51.36 | 46.81 |
| GSMUA_Achr5P04870_001 | Banana | nucleus | 53.31 | 45.97 |
| CDY20325 | Canola | nucleus | 50.58 | 45.94 |
| KRH61946 | Soybean | nucleus, plastid | 48.64 | 44.8 |
| GSMUA_Achr3P00510_001 | Banana | nucleus | 45.53 | 44.32 |
| CDX72310 | Canola | nucleus | 48.64 | 44.01 |
| GSMUA_Achr1P23560_001 | Banana | nucleus | 51.75 | 43.89 |
| GSMUA_Achr9P22950_001 | Banana | nucleus | 47.86 | 43.77 |
| Zm00001d002405_P001 | Maize | nucleus | 50.19 | 43.29 |
| CDY13441 | Canola | nucleus | 49.03 | 43.0 |
| GSMUA_Achr3P27880_001 | Banana | nucleus | 45.91 | 42.91 |
| VIT_04s0069g00920.t01 | Wine grape | nucleus | 56.03 | 42.6 |
| KRH37367 | Soybean | nucleus | 49.03 | 42.57 |
| Os04t0605100-01 | Rice | nucleus | 50.97 | 42.39 |
| CDY36432 | Canola | nucleus | 45.91 | 41.84 |
| KRH52606 | Soybean | nucleus | 48.64 | 41.67 |
| CDY60852 | Canola | nucleus | 47.86 | 41.28 |
| TraesCS2B01G454300.1 | Wheat | nucleus | 50.19 | 41.21 |
| KRH12362 | Soybean | nucleus | 46.69 | 40.96 |
| EES11384 | Sorghum | nucleus | 50.19 | 40.95 |
| KRH16144 | Soybean | nucleus | 50.19 | 40.82 |
| PGSC0003DMT400075531 | Potato | nucleus | 49.42 | 40.71 |
| KRH04945 | Soybean | nucleus | 49.81 | 40.51 |
| Zm00001d026252_P001 | Maize | nucleus | 49.81 | 40.51 |
| TraesCS2D01G431000.1 | Wheat | nucleus | 50.97 | 40.43 |
| CDY45583 | Canola | nucleus | 50.58 | 40.0 |
| TraesCS2A01G433000.1 | Wheat | nucleus | 50.97 | 39.94 |
| CDX68763 | Canola | nucleus | 46.3 | 39.93 |
| Bra011282.1-P | Field mustard | nucleus | 49.42 | 39.44 |
| AT4G31550.1 | Thale cress | nucleus | 49.81 | 39.38 |
| Bra032084.1-P | Field mustard | nucleus | 49.81 | 39.38 |
| Bra023998.1-P | Field mustard | nucleus | 49.81 | 39.02 |
| AT2G24570.1 | Thale cress | nucleus | 48.64 | 38.94 |
| HORVU4Hr1G012580.5 | Barley | nucleus, plastid | 22.96 | 38.56 |
| CDY23304 | Canola | nucleus | 45.91 | 38.56 |
| GSMUA_Achr8P20660_001 | Banana | nucleus | 37.74 | 38.34 |
| PGSC0003DMT400024632 | Potato | nucleus | 49.81 | 38.32 |
| Solyc08g006320.2.1 | Tomato | nucleus | 48.25 | 37.8 |
| GSMUA_Achr4P03660_001 | Banana | nucleus | 39.69 | 37.78 |
| GSMUA_Achr9P10740_001 | Banana | nucleus | 36.97 | 37.11 |
| Bra010231.1-P | Field mustard | nucleus | 47.86 | 37.05 |
| Solyc12g096350.1.1 | Tomato | nucleus | 48.25 | 36.69 |
| GSMUA_Achr3P29310_001 | Banana | nucleus | 38.91 | 36.1 |
| HORVU5Hr1G122800.4 | Barley | plastid | 32.3 | 32.17 |
| GSMUA_Achr10P... | Banana | nucleus | 36.97 | 31.46 |
| GSMUA_Achr2P17580_001 | Banana | nucleus | 33.85 | 29.0 |
| GSMUA_Achr9P21560_001 | Banana | nucleus | 39.3 | 27.67 |
| GSMUA_Achr5P20810_001 | Banana | nucleus | 28.79 | 26.71 |
| HORVU5Hr1G052630.2 | Barley | plastid | 26.07 | 26.59 |
| HORVU3Hr1G097420.1 | Barley | nucleus | 27.24 | 21.94 |
| HORVU3Hr1G039500.1 | Barley | plastid | 26.85 | 21.77 |
| GSMUA_Achr7P24840_001 | Banana | nucleus | 19.46 | 20.16 |
| GSMUA_Achr4P08360_001 | Banana | nucleus | 20.23 | 20.16 |
| GSMUA_Achr3P15690_001 | Banana | nucleus | 19.46 | 19.68 |
| GSMUA_Achr7P14300_001 | Banana | nucleus | 22.96 | 18.97 |
| GSMUA_Achr10P... | Banana | nucleus | 21.79 | 18.67 |
| GSMUA_Achr4P15540_001 | Banana | nucleus | 20.23 | 18.18 |
| GSMUA_Achr8P27790_001 | Banana | nucleus | 16.73 | 17.77 |
| GSMUA_Achr10P... | Banana | nucleus | 21.01 | 17.7 |
| GSMUA_Achr5P03670_001 | Banana | nucleus | 23.35 | 17.7 |
| GSMUA_Achr5P09430_001 | Banana | nucleus | 22.57 | 17.06 |
| GSMUA_Achr8P19810_001 | Banana | nucleus | 22.57 | 16.57 |
| GSMUA_Achr4P27420_001 | Banana | nucleus | 22.96 | 16.08 |
| GSMUA_Achr9P05460_001 | Banana | nucleus | 22.18 | 15.66 |
| GSMUA_Achr1P05010_001 | Banana | nucleus | 21.79 | 15.18 |
| GSMUA_Achr8P14610_001 | Banana | nucleus | 22.57 | 15.06 |
| GSMUA_Achr9P03020_001 | Banana | nucleus | 23.74 | 14.84 |
| GSMUA_Achr6P31840_001 | Banana | nucleus | 22.18 | 14.81 |
| GSMUA_Achr11P... | Banana | nucleus | 22.18 | 14.54 |
| GSMUA_Achr11P... | Banana | nucleus | 20.62 | 14.29 |
| GSMUA_Achr2P09710_001 | Banana | nucleus | 23.74 | 13.09 |
| GSMUA_Achr10P... | Banana | plastid | 21.79 | 12.47 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | EnsemblPlantsGene:GSMUA_Achr6G03810_001 | EnsemblPlants:GSMUA_Achr6P03810_001 | EnsemblPlants:GSMUA_Achr6T03810_001 | InterPro:IPR003657 | InterPro:IPR036576 |
| UniProt:M0T3X9 | PFAM:PF03106 | PFAM:PF10533 | PFscan:PS50811 | PANTHER:PTHR31282 | PANTHER:PTHR31282:SF18 |
| SMART:SM00774 | SUPFAM:SSF118290 | UniParc:UPI000294BE70 | InterPro:WRKY_dom | InterPro:WRKY_dom_sf | InterPro:Zn-cluster-dom |
| SEG:seg | : | : | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G03810_001]
Coordinates
chr6:-:2604813..2609984
Molecular Weight (calculated)
28589.4 Da
IEP (calculated)
11.133
GRAVY (calculated)
-0.730
Length
257 amino acids
Sequence
(BLAST)
(BLAST)
001: MRERVPKKTR SSIHAGIVGL VGFREGIVLP IWIPSRGKAK DQCRRSGNIQ QQQQDCREIA DLAVSKFKKV ISILNRTGHA RFRRGPTGPP PPGRPSLPAA
101: SKTLTLAPVS PPSRYNKGCF SISKSLSSAT SSFVSSHTHA HSDHVAGKYA VPGSRCHCSK KRKSRVKRTI RVPAISSKVA DIPGDEYSWR KYGQKPIKGS
201: PYPRGYYKCS TVRGCPARKH VERAPDDPSM LIVTYEAEHR HNPTSIYHFR SLKENNK
101: SKTLTLAPVS PPSRYNKGCF SISKSLSSAT SSFVSSHTHA HSDHVAGKYA VPGSRCHCSK KRKSRVKRTI RVPAISSKVA DIPGDEYSWR KYGQKPIKGS
201: PYPRGYYKCS TVRGCPARKH VERAPDDPSM LIVTYEAEHR HNPTSIYHFR SLKENNK
001: MAVELMTRNY ISGVGADSFA VQEAAASGLK SIENFIGLMS RDSFNSDQPS SSSASASASA AADLESARNT TADAAVSKFK RVISLLDRTR TGHARFRRAP
101: VHVISPVLLQ EEPKTTPFQS PLPPPPQMIR KGSFSSSMKT IDFSSLSSVT TESDNQKKIH HHQRPSETAP FASQTQSLST TVSSFSKSTK RKCNSENLLT
201: GKCASASSSG RCHCSKKRKI KQRRIIRVPA ISAKMSDVPP DDYSWRKYGQ KPIKGSPHPR GYYKCSSVRG CPARKHVERA ADDSSMLIVT YEGDHNHSLS
301: AADLAGAAVA DLILESS
101: VHVISPVLLQ EEPKTTPFQS PLPPPPQMIR KGSFSSSMKT IDFSSLSSVT TESDNQKKIH HHQRPSETAP FASQTQSLST TVSSFSKSTK RKCNSENLLT
201: GKCASASSSG RCHCSKKRKI KQRRIIRVPA ISAKMSDVPP DDYSWRKYGQ KPIKGSPHPR GYYKCSSVRG CPARKHVERA ADDSSMLIVT YEGDHNHSLS
301: AADLAGAAVA DLILESS
Arabidopsis Description
WRKY15Probable WRKY transcription factor 15 [Source:UniProtKB/Swiss-Prot;Acc:O22176]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.