CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER94083
EES01631
EES09201
EES16322
OQU78227

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24570.1	EES01631	AT3G56800.1	15733871
AT2G24570.1	EES09201	AT3G56800.1	15733871
AT2G24570.1	EES16322	AT3G56800.1	15733871
AT2G24570.1	OQU78227	AT3G56800.1	15733871
AT2G24570.1	EER94083	AT5G28900.1	21798944
AT4G31550.1	EES01631	AT3G56800.1	15733871
AT4G31550.1	EES09201	AT3G56800.1	15733871
AT4G31550.1	EES16322	AT3G56800.1	15733871
AT4G31550.1	OQU78227	AT3G56800.1	15733871

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002405_P001	Maize	nucleus	85.08	89.93
Zm00001d026252_P001	Maize	nucleus	86.35	86.08
Os04t0605100-01	Rice	nucleus	80.95	82.52
TraesCS2B01G454300.1	Wheat	nucleus	80.32	80.83
TraesCS2D01G431000.1	Wheat	nucleus	82.54	80.25
TraesCS2A01G433000.1	Wheat	nucleus	82.22	78.96
HORVU4Hr1G012580.5	Barley	nucleus, plastid	37.14	76.47
HORVU5Hr1G122800.4	Barley	plastid	49.84	60.85
HORVU5Hr1G052630.2	Barley	plastid	44.44	55.56
CDY60852	Canola	nucleus	50.79	53.69
CDX72310	Canola	nucleus	48.25	53.52
CDY20325	Canola	nucleus	47.3	52.65
CDX68763	Canola	nucleus	49.52	52.35
EES14755	Sorghum	nucleus	52.7	52.2
CDY13441	Canola	nucleus	48.25	51.88
CDY23304	Canola	nucleus	49.84	51.31
KRH16144	Soybean	nucleus	51.43	51.27
CDY36432	Canola	nucleus	45.71	51.06
KRH37367	Soybean	nucleus	47.62	50.68
Bra011282.1-P	Field mustard	nucleus	51.75	50.62
GSMUA_Achr6P03810_001	Banana	nucleus	40.95	50.19
KRH52606	Soybean	nucleus	47.62	50.0
VIT_04s0069g00920.t01	Wine grape	nucleus	53.33	49.7
KRH04945	Soybean	nucleus	49.84	49.68
AT4G31550.1	Thale cress	nucleus	51.11	49.54
KRH61946	Soybean	nucleus, plastid	43.81	49.46
Bra023998.1-P	Field mustard	nucleus	51.43	49.39
CDY45583	Canola	nucleus	50.16	48.62
AT2G24570.1	Thale cress	nucleus	49.52	48.6
Bra010231.1-P	Field mustard	nucleus	50.79	48.19
KRH12362	Soybean	nucleus	44.76	48.12
Bra032084.1-P	Field mustard	nucleus	49.52	48.0
PGSC0003DMT400024632	Potato	nucleus	50.48	47.6
Solyc08g006320.2.1	Tomato	nucleus	49.21	47.26
PGSC0003DMT400075531	Potato	nucleus	45.4	45.83
HORVU3Hr1G039500.1	Barley	plastid	45.08	44.8
OQU84894	Sorghum	nucleus	40.63	42.81
Solyc12g096350.1.1	Tomato	nucleus	43.81	40.83
EER91209	Sorghum	nucleus	37.46	33.52
EES17321	Sorghum	nucleus	37.46	31.81
EER93478	Sorghum	nucleus	33.97	26.35
KXG37354	Sorghum	nucleus	33.02	23.96
EES03611	Sorghum	nucleus	18.41	18.71
KXG22622	Sorghum	nucleus	19.68	17.03
EES04883	Sorghum	nucleus	20.0	16.8
EER89819	Sorghum	nucleus	18.41	16.57
KXG37092	Sorghum	nucleus	20.32	16.33
EES03563	Sorghum	plastid	16.19	15.99
OQU92055	Sorghum	nucleus	20.63	15.22
EES03310	Sorghum	nucleus, plastid	19.37	14.77
KXG27029	Sorghum	nucleus	22.22	13.86
EES07413	Sorghum	nucleus	21.27	13.48

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	EntrezGene:8063931	UniProt:C5YFI1	EnsemblPlants:EES11384	ProteinID:EES11384
ProteinID:EES11384.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFAM:PF10533	PFscan:PS50811	PANTHER:PTHR31282
PANTHER:PTHR31282:SF32	SMART:SM00774	EnsemblPlantsGene:SORBI_3006G206000	SUPFAM:SSF118290	unigene:Sbi.3710	UniParc:UPI000189D011
InterPro:WRKY_dom	InterPro:WRKY_dom_sf	RefSeq:XP_002447056.1	InterPro:Zn-cluster-dom	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:+:55572908..55574447

Molecular Weight (calculated)

33133.4 Da

IEP (calculated)

10.620

GRAVY (calculated)

-0.408

Length

315 amino acids

Sequence
(BLAST)

001: MAVDLMGCYA PRRADDQLAI QEAAAESLRS LELLVSSLST QAGAPHRAAH HLQQQQPFGE IADQAVSKFR KVISILDRTG HARFRRGPVE SPPRAAAAPP
101: VPAPAPALSL APLAHVAPVS AAQPAPASQP PQSLTLDFTK PNLTMSGATS VTSTSFFSSV TAGEGSVSKG RSLMSSGKPP LSGHKRKPCA GAHSEATTNG
201: GRCHCSKRRK NRVKRTIRVP AISSKIADIP PDEYSWRKYG QKPIKGSPYP RGYYKCSTVR GCPARKHVER ATDDPAMLVV TYEGEHRHTP GAAGPSPLAT
301: ASPVAAAVSA GNGHV

Best Arabidopsis Sequence Match ( AT4G31550.1 )
(BLAST)

001: MAVDLMRFPK IDDQTAIQEA ASQGLQSMEH LIRVLSNRPE QQHNVDCSEI TDFTVSKFKT VISLLNRTGH ARFRRGPVHS TSSAASQKLQ SQIVKNTQPE
101: APIVRTTTNH PQIVPPPSSV TLDFSKPSIF GTKAKSAELE FSKENFSVSL NSSFMSSAIT GDGSVSNGKI FLASAPLQPV NSSGKPPLAG HPYRKRCLEH
201: EHSESFSGKV SGSAYGKCHC KKSRKNRMKR TVRVPAISAK IADIPPDEYS WRKYGQKPIK GSPHPRGYYK CSTFRGCPAR KHVERALDDP AMLIVTYEGE
301: HRHNQSAMQE NISSSGINDL VFASA

Arabidopsis Description

WRKY11Probable WRKY transcription factor 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9SV15]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.