CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01631
EES09201
EES16322
OQU78227

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04670.1	EES01631	AT3G56800.1	15733871
AT3G04670.1	EES09201	AT3G56800.1	15733871
AT3G04670.1	EES16322	AT3G56800.1	15733871
AT3G04670.1	OQU78227	AT3G56800.1	15733871
AT5G28650.1	EES01631	AT3G56800.1	15733871
AT5G28650.1	EES09201	AT3G56800.1	15733871
AT5G28650.1	EES16322	AT3G56800.1	15733871
AT5G28650.1	OQU78227	AT3G56800.1	15733871

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033965_P001	Maize	nucleus	88.18	90.18
Os03t0741400-01	Rice	nucleus	80.54	84.5
TraesCS5D01G390800.1	Wheat	nucleus	76.35	78.68
HORVU5Hr1G094050.1	Barley	nucleus	76.11	78.23
TraesCS5A01G381000.1	Wheat	nucleus	76.11	77.83
TraesCS5B01G384600.1	Wheat	nucleus	76.35	77.5
Solyc09g066010.2.1	Tomato	nucleus	44.09	54.08
GSMUA_Achr10P...	Banana	nucleus	39.66	53.31
Bra040396.1-P	Field mustard	nucleus	38.92	52.15
CDY50747	Canola	nucleus	38.67	51.82
PGSC0003DMT400038986	Potato	nucleus	44.09	51.73
VIT_07s0141g00680.t01	Wine grape	nucleus	42.61	50.88
EER91209	Sorghum	nucleus	44.09	50.85
CDY41890	Canola	nucleus	37.93	49.2
CDY40667	Canola	nucleus	38.18	48.74
KRH71315	Soybean	nucleus	42.36	48.45
CDX74175	Canola	nucleus	38.18	48.29
Bra001117.1-P	Field mustard	nucleus	37.93	48.28
Solyc06g008610.2.1	Tomato	nucleus	41.13	47.99
AT3G04670.1	Thale cress	nucleus	38.92	47.88
KRH67313	Soybean	nucleus	39.66	47.21
PGSC0003DMT400013632	Potato	nucleus	41.13	47.04
EES17321	Sorghum	nucleus	42.61	46.63
AT5G28650.1	Thale cress	nucleus	37.44	46.06
Bra020617.1-P	Field mustard	nucleus	37.68	45.4
CDY33884	Canola	nucleus	37.68	45.4
CDY48658	Canola	nucleus	37.68	45.4
Bra010005.1-P	Field mustard	nucleus	37.93	45.16
CDX86205	Canola	nucleus	37.93	45.16
CDY05601	Canola	nucleus	36.95	44.51
KRH32116	Soybean	extracellular	40.89	42.35
EES11384	Sorghum	nucleus	26.35	33.97
KXG37354	Sorghum	nucleus	34.98	32.72
OQU84894	Sorghum	nucleus	23.89	32.44
EES14755	Sorghum	nucleus	23.15	29.56
EES03611	Sorghum	nucleus	12.81	16.77
EER89819	Sorghum	nucleus	13.79	16.0
KXG22622	Sorghum	nucleus	13.79	15.38
EES03563	Sorghum	plastid	12.07	15.36
KXG37092	Sorghum	nucleus	14.78	15.31
EES04883	Sorghum	nucleus	13.79	14.93
OQU92055	Sorghum	nucleus	15.27	14.52
EES03310	Sorghum	nucleus, plastid	13.55	13.32
EES07413	Sorghum	nucleus	16.01	13.08
KXG27029	Sorghum	nucleus	16.01	12.87

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	EntrezGene:8085964	UniProt:C5X195	EnsemblPlants:EER93478	ProteinID:EER93478
ProteinID:EER93478.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFAM:PF10533	PFscan:PS50811	PANTHER:PTHR31282
PANTHER:PTHR31282:SF20	SMART:SM00774	EnsemblPlantsGene:SORBI_3001G095500	SUPFAM:SSF118290	unigene:Sbi.10763	UniParc:UPI0001A826F5
InterPro:WRKY_dom	InterPro:WRKY_dom_sf	RefSeq:XP_002466480.1	InterPro:Zn-cluster-dom	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:-:7340447..7343822

Molecular Weight (calculated)

43620.4 Da

IEP (calculated)

10.687

GRAVY (calculated)

-0.488

Length

406 amino acids

Sequence
(BLAST)

001: MGPSSIQEME EARRTAVQSC HRVLALLSNP HGQLVPSKDL MAATGEAVAK FGSLTAKLTN SNSNSNGNGL QLQGHARVRK IKKPLPIFDS NLFLESSAVA
101: AAAAATVAKT PSPSPITGLQ LFPRYHQMEG SSSKDPVRIP TQFPKRLLLE NPAAGLEGLP SKAPPVQMVQ PVSVAPPAGT PTPALPAAHL HFLQQNQSYQ
201: RFQLMHQMKI QNEMMKRSNL GDQGGSLSGG GGGKGVNLKF DSSNCTASSS RSFLSSLSME GTLASLDGSR ASRPFQLVSG SQTSSTPEMG LVHRKRCAGR
301: EDGGGRCTTG SRCHCSKKRK LRIRRSIKVP AISNKVADIP ADEFSWRKYG QKPIKGSPHP RGYYKCSSVR GCPARKHVER CVDDPSMLIV TYEGDHNHNR
401: VLAQPA

Best Arabidopsis Sequence Match ( AT2G30590.1 )
(BLAST)

001: MEEIEGTNRA AVESCHRVLN LLHRSQQQDH VGFEKNLVSE TREAVIRFKR VGSLLSSSVG HARFRRAKKL QSHVSQSLLL DPCQQRTTEV PSSSSQKTPV
101: LRSGFQELSL RQPSDSLTLG TRSFSLNSNA KAPLLQLNQQ TMPPSNYPTL FPVQQQQQQQ QQQQQQEQQQ QQQQQQQQFH ERLQAHHLHQ QQQLQKHQAE
201: LMLRKCNGGI SLSFDNSSCT PTMSSTRSFV SSLSIDGSVA NIEGKNSFHF GVPSSTDQNS LHSKRKCPLK GDEHGSLKCG SSSRCHCAKK RKHRVRRSIR
301: VPAISNKVAD IPPDDYSWRK YGQKPIKGSP YPRGYYKCSS MRGCPARKHV ERCLEDPAML IVTYEAEHNH PKLPSQAITT

Arabidopsis Description

WRKY21Probable WRKY transcription factor 21 [Source:UniProtKB/Swiss-Prot;Acc:O04336]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.