Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G04670.1 | CDY57144 | AT3G56800.1 | 15733871 |
| AT3G04670.1 | CDY65072 | AT3G56800.1 | 15733871 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74175 | Canola | nucleus | 94.34 | 93.46 |
| CDY50747 | Canola | nucleus | 80.5 | 84.49 |
| CDY41890 | Canola | nucleus | 83.02 | 84.34 |
| AT3G04670.1 | Thale cress | nucleus | 84.91 | 81.82 |
| CDY48658 | Canola | nucleus | 74.21 | 70.03 |
| CDX86205 | Canola | nucleus | 74.21 | 69.21 |
| CDY33884 | Canola | nucleus | 72.96 | 68.84 |
| CDY05601 | Canola | nucleus | 72.01 | 67.95 |
| VIT_07s0141g00680.t01 | Wine grape | nucleus | 55.66 | 52.06 |
| Solyc09g066010.2.1 | Tomato | nucleus | 54.09 | 51.96 |
| GSMUA_Achr10P... | Banana | nucleus | 48.43 | 50.99 |
| PGSC0003DMT400038986 | Potato | nucleus | 54.72 | 50.29 |
| CDY29658 | Canola | nucleus | 49.69 | 49.07 |
| KRH71315 | Soybean | nucleus | 54.09 | 48.45 |
| CDX97806 | Canola | nucleus | 49.69 | 47.88 |
| KRH67313 | Soybean | nucleus | 50.94 | 47.51 |
| Solyc06g008610.2.1 | Tomato | nucleus | 51.89 | 47.41 |
| CDY10749 | Canola | nucleus | 49.37 | 47.01 |
| CDX84824 | Canola | nucleus | 49.69 | 46.75 |
| PGSC0003DMT400013632 | Potato | nucleus | 51.57 | 46.2 |
| TraesCS5B01G066400.1 | Wheat | nucleus | 51.26 | 45.92 |
| TraesCS4B01G069500.2 | Wheat | nucleus | 49.06 | 45.88 |
| CDY23988 | Canola | nucleus | 49.06 | 45.88 |
| TraesCS5D01G070700.1 | Wheat | nucleus | 51.26 | 45.79 |
| TraesCS4D01G068200.1 | Wheat | nucleus | 49.06 | 45.75 |
| TraesCS5A01G059100.1 | Wheat | nucleus | 50.94 | 45.63 |
| TraesCS4A01G246000.2 | Wheat | nucleus | 50.0 | 45.56 |
| CDY47130 | Canola | nucleus | 49.06 | 45.48 |
| EER91209 | Sorghum | nucleus | 50.31 | 45.45 |
| Zm00001d033291_P007 | Maize | nucleus | 49.06 | 44.07 |
| Os12t0597700-01 | Rice | nucleus | 49.69 | 43.53 |
| EES17321 | Sorghum | nucleus | 50.31 | 43.13 |
| Zm00001d041397_P001 | Maize | nucleus | 49.37 | 42.78 |
| KRH32116 | Soybean | extracellular | 52.52 | 42.6 |
| Zm00001d013709_P003 | Maize | nucleus | 47.8 | 41.19 |
| Zm00001d030969_P001 | Maize | nucleus | 48.43 | 41.18 |
| Os03t0741400-01 | Rice | nucleus | 50.0 | 41.09 |
| CDY20325 | Canola | nucleus | 35.53 | 39.93 |
| Zm00001d013307_P003 | Maize | nucleus | 48.43 | 38.99 |
| CDX89558 | Canola | nucleus | 36.48 | 38.93 |
| Zm00001d033965_P001 | Maize | nucleus | 48.43 | 38.79 |
| HORVU4Hr1G011590.2 | Barley | nucleus, plastid | 50.0 | 38.59 |
| HORVU5Hr1G094050.1 | Barley | nucleus | 47.8 | 38.48 |
| TraesCS5D01G390800.1 | Wheat | nucleus | 47.48 | 38.32 |
| EER93478 | Sorghum | nucleus | 48.74 | 38.18 |
| CDY38936 | Canola | nucleus | 36.48 | 38.16 |
| CDY36432 | Canola | nucleus | 33.65 | 37.94 |
| CDX68763 | Canola | nucleus | 35.53 | 37.92 |
| CDY60852 | Canola | nucleus | 35.53 | 37.92 |
| TraesCS5A01G381000.1 | Wheat | nucleus | 47.17 | 37.78 |
| TraesCS5B01G384600.1 | Wheat | nucleus | 47.48 | 37.75 |
| CDX72310 | Canola | nucleus | 33.33 | 37.32 |
| CDY13441 | Canola | nucleus | 34.28 | 37.2 |
| CDY45583 | Canola | nucleus | 37.11 | 36.31 |
| CDY23304 | Canola | nucleus | 34.28 | 35.62 |
| CDY03470 | Canola | nucleus | 36.16 | 34.02 |
| CDY10996 | Canola | nucleus | 33.33 | 30.55 |
| CDX92626 | Canola | nucleus | 33.33 | 30.46 |
| CDY34269 | Canola | nucleus | 35.53 | 28.18 |
| CDX71933 | Canola | nucleus | 15.72 | 25.13 |
| CDX90180 | Canola | nucleus | 16.67 | 20.31 |
| CDY07185 | Canola | nucleus | 18.55 | 20.21 |
| CDY01962 | Canola | nucleus | 18.24 | 19.93 |
| CDX99806 | Canola | nucleus | 16.35 | 19.92 |
| CDY48511 | Canola | nucleus | 18.55 | 19.8 |
| CDY69417 | Canola | nucleus | 14.15 | 19.48 |
| CDY50779 | Canola | nucleus | 16.04 | 19.47 |
| CDY59336 | Canola | nucleus | 17.3 | 18.58 |
| CDY49246 | Canola | nucleus | 15.72 | 18.45 |
| CDY10943 | Canola | nucleus | 17.3 | 18.39 |
| CDY00583 | Canola | nucleus | 16.04 | 18.28 |
| CDX89000 | Canola | nucleus | 16.04 | 18.28 |
| CDX94201 | Canola | nucleus | 16.98 | 18.06 |
| CDY44115 | Canola | nucleus | 16.67 | 17.91 |
| CDY41375 | Canola | nucleus | 17.3 | 17.86 |
| CDX76334 | Canola | nucleus | 17.3 | 17.86 |
| CDY27045 | Canola | nucleus | 17.92 | 16.57 |
| CDX96157 | Canola | nucleus | 17.92 | 16.38 |
| CDX77581 | Canola | nucleus | 18.87 | 15.87 |
| CDX98217 | Canola | nucleus | 18.87 | 15.58 |
| CDY52525 | Canola | nucleus | 19.5 | 14.87 |
| CDY09551 | Canola | nucleus | 18.55 | 14.29 |
| CDY43651 | Canola | nucleus | 17.92 | 13.7 |
| CDY72268 | Canola | cytosol, plastid | 0.94 | 2.91 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | GO:A0A078HS54 | UniProt:A0A078HS54 | EnsemblPlants:CDY40667 | ProteinID:CDY40667 |
| ProteinID:CDY40667.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00071545001 | InterPro:IPR003657 | InterPro:IPR036576 | PFAM:PF03106 | PFAM:PF10533 | PFscan:PS50811 |
| PANTHER:PTHR31282 | PANTHER:PTHR31282:SF12 | SMART:SM00774 | SUPFAM:SSF118290 | UniParc:UPI0004EE415E | InterPro:WRKY_dom |
| InterPro:WRKY_dom_sf | InterPro:Zn-cluster-dom | SEG:seg | : | : | : |
Description
BnaC03g33830DBnaC03g33830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HS54]
Coordinates
chrLK032477:-:49181..50426
Molecular Weight (calculated)
35292.2 Da
IEP (calculated)
9.807
GRAVY (calculated)
-0.526
Length
318 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEVEIASKL AIESCHGVLN LLSQQQTSCD FKSLMVETSE AVSKFKRVSS LFTRGPPGHA KFRRPNKKFI PSFPQHIFLE SPISCGNDVT SDYNQVLAPE
101: PLQMVPAPSI LSHRMCVEKS FLELKPPPPF RGPYQLIHNH QQIAYSRSSS GVNLTFDGAG SSCYTPSVSN GSRSFVSSLS MDTSAVDYDR SSFHLSGLSR
201: GSDQMSKKMC SGGLKCGSRS KCHCSKKRKL RVKRSIKVPA ISNKIADIPP DEYSWRKYGQ KPIKGSPHPR GYYKCSSVRG CPARKHVERC VDETSMLIVT
301: YEGEHNHSRL LSSQSAHT
101: PLQMVPAPSI LSHRMCVEKS FLELKPPPPF RGPYQLIHNH QQIAYSRSSS GVNLTFDGAG SSCYTPSVSN GSRSFVSSLS MDTSAVDYDR SSFHLSGLSR
201: GSDQMSKKMC SGGLKCGSRS KCHCSKKRKL RVKRSIKVPA ISNKIADIPP DEYSWRKYGQ KPIKGSPHPR GYYKCSSVRG CPARKHVERC VDETSMLIVT
301: YEGEHNHSRL LSSQSAHT
001: MEEVEAANRS AIESCHGVLN LLSQRTSDPK SLTVETGEVV SKFKRVASLL TRGLGHGKFR STNKFRSSFP QHIFLESPIC CGNDLSGDYT QVLAPEPLQM
101: VPASAVYNEM EPKHQLGHPS LMLSHKMCVD KSFLELKPPP FRAPYQLIHN HQQIAYSRSN SGVNLKFDGS GSSCYTPSVS NGSRSFVSSL SMDASVTDYD
201: RNSFHLTGLS RGSDQQHTRK MCSGSLKCGS RSKCHCSKKR KLRVKRSIKV PAISNKIADI PPDEYSWRKY GQKPIKGSPH PRGYYKCSSV RGCPARKHVE
301: RCIDETSMLI VTYEGEHNHS RILSSQSAHT
101: VPASAVYNEM EPKHQLGHPS LMLSHKMCVD KSFLELKPPP FRAPYQLIHN HQQIAYSRSN SGVNLKFDGS GSSCYTPSVS NGSRSFVSSL SMDASVTDYD
201: RNSFHLTGLS RGSDQQHTRK MCSGSLKCGS RSKCHCSKKR KLRVKRSIKV PAISNKIADI PPDEYSWRKY GQKPIKGSPH PRGYYKCSSV RGCPARKHVE
301: RCIDETSMLI VTYEGEHNHS RILSSQSAHT
Arabidopsis Description
WRKY39Probable WRKY transcription factor 39 [Source:UniProtKB/Swiss-Prot;Acc:Q9SR07]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.