CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX83145
CDX86457
CDY02176
CDY23090
CDY34012
CDY57144
CDY58518
CDY65072
CDY68624

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30590.1	CDX86457	AT3G27960.1	21798944
AT2G30590.1	CDY58518	AT3G27960.1	21798944
AT2G30590.1	CDY57144	AT3G56800.1	15733871
AT2G30590.1	CDY65072	AT3G56800.1	15733871
AT2G30590.1	CDX83145	AT4G08150.1	21798944
AT2G30590.1	CDY34012	AT4G08150.1	21798944
AT2G30590.1	CDY68624	AT4G08150.1	21798944
AT2G30590.1	CDY02176	AT5G61010.1	21798944
AT2G30590.1	CDY23090	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84824	Canola	nucleus	94.71	95.27
Bra022808.1-P	Field mustard	nucleus	94.41	94.97
CDY29658	Canola	nucleus	77.06	81.37
CDX97806	Canola	nucleus	78.24	80.61
CDY47130	Canola	nucleus	78.24	77.55
CDY10749	Canola	nucleus	76.18	77.54
AT2G30590.1	Thale cress	nucleus	80.59	72.11
GSMUA_Achr4P03660_001	Banana	nucleus	44.71	56.3
GSMUA_Achr3P29310_001	Banana	nucleus	45.29	55.6
CDY40667	Canola	nucleus	45.88	49.06
CDX74175	Canola	nucleus	45.59	48.29
CDY50747	Canola	nucleus	42.65	47.85
CDY41890	Canola	nucleus	43.82	47.6
GSMUA_Achr9P21560_001	Banana	nucleus	48.53	45.21
CDY48658	Canola	nucleus	44.71	45.1
CDX86205	Canola	nucleus	45.0	44.87
CDY33884	Canola	nucleus	44.41	44.81
CDY05601	Canola	nucleus	44.41	44.81
CDY20325	Canola	nucleus	31.18	37.46
CDY36432	Canola	nucleus	29.71	35.82
CDX89558	Canola	nucleus	31.18	35.57
CDY38936	Canola	nucleus	31.76	35.53
CDX72310	Canola	nucleus	29.41	35.21
CDY60852	Canola	nucleus	30.59	34.9
CDX68763	Canola	nucleus	30.29	34.56
CDY45583	Canola	nucleus	32.65	34.15
CDY13441	Canola	nucleus	29.41	34.13
CDY03470	Canola	nucleus	33.82	34.02
CDY23304	Canola	nucleus	30.59	33.99
CDY10996	Canola	nucleus	32.06	31.41
CDX92626	Canola	nucleus	31.76	31.03
CDY34269	Canola	nucleus	33.24	28.18
CDX71933	Canola	nucleus	15.59	26.63
CDX90180	Canola	nucleus	16.76	21.84
CDX99806	Canola	nucleus	16.47	21.46
CDY07185	Canola	nucleus	18.24	21.23
CDY50779	Canola	nucleus	16.18	20.99
CDY48511	Canola	nucleus	18.24	20.81
CDY69417	Canola	nucleus	13.82	20.35
CDY01962	Canola	nucleus	17.35	20.27
CDY49246	Canola	nucleus	15.59	19.56
CDX89000	Canola	nucleus	15.88	19.35
CDY00583	Canola	nucleus	15.88	19.35
CDX94201	Canola	nucleus	15.59	17.73
CDY27045	Canola	nucleus	17.65	17.44
CDY10943	Canola	nucleus	15.29	17.39
CDX96157	Canola	nucleus	17.65	17.24
CDY59336	Canola	nucleus	14.71	16.89
CDY44115	Canola	nucleus	14.71	16.89
CDX76334	Canola	nucleus	15.29	16.88
CDY41375	Canola	nucleus	15.29	16.88
CDY52525	Canola	nucleus	19.41	15.83
CDX77581	Canola	nucleus	17.35	15.61
CDX98217	Canola	nucleus	17.35	15.32
CDY43651	Canola	nucleus	17.65	14.42
CDY09551	Canola	nucleus	17.06	14.04
CDY72268	Canola	cytosol, plastid	0.59	1.94

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:A0A078GH67	UniProt:A0A078GH67	EnsemblPlants:CDY23988	ProteinID:CDY23988
ProteinID:CDY23988.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:GSBRNA2T00024504001	InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFAM:PF10533
PFscan:PS50811	PANTHER:PTHR31282	PANTHER:PTHR31282:SF12	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI0004EAE00F
InterPro:WRKY_dom	InterPro:WRKY_dom_sf	InterPro:Zn-cluster-dom	SEG:seg	:	:

Description

BnaC03g17030DBnaC03g17030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GH67]

Coordinates

chrLK032152:-:348823..350683

Molecular Weight (calculated)

38003.1 Da

IEP (calculated)

10.282

GRAVY (calculated)

-0.704

Length

340 amino acids

Sequence
(BLAST)

001: MEEIEGTNRA AVESCHRVLN LISSRPHQQD HLYDMSLLSE AREAVFRFKR VGNLLSNSSS SSSVGHARFR RAKRPLIHLS QTIFLDSCLQ RTEPPSSQKA
101: PVVLRSDLSL GPADSLTLGT RSFGLNSNAK APLLQLNPQQ QQQLHERLQA HQQQQQRHQA EMMLRKCNSG MSLSFDNSSC TPTMSSTRSF ISSLSIDGSV
201: NNSSSFHLLG APSSTDQSSQ YSKRKCLMRG ADEHGSAKCG SSSRCHCSKK RKHRIRRSIR VPAISNKVAD IPPDDYSWRK YGQKPIKGSP YPRGYYKCSS
301: IRGCPARKHV ERCLEDPAML IVTYEAEHNH PKLPSQTVTT

Best Arabidopsis Sequence Match ( AT2G30590.1 )
(BLAST)

001: MEEIEGTNRA AVESCHRVLN LLHRSQQQDH VGFEKNLVSE TREAVIRFKR VGSLLSSSVG HARFRRAKKL QSHVSQSLLL DPCQQRTTEV PSSSSQKTPV
101: LRSGFQELSL RQPSDSLTLG TRSFSLNSNA KAPLLQLNQQ TMPPSNYPTL FPVQQQQQQQ QQQQQQEQQQ QQQQQQQQFH ERLQAHHLHQ QQQLQKHQAE
201: LMLRKCNGGI SLSFDNSSCT PTMSSTRSFV SSLSIDGSVA NIEGKNSFHF GVPSSTDQNS LHSKRKCPLK GDEHGSLKCG SSSRCHCAKK RKHRVRRSIR
301: VPAISNKVAD IPPDDYSWRK YGQKPIKGSP YPRGYYKCSS MRGCPARKHV ERCLEDPAML IVTYEAEHNH PKLPSQAITT

Arabidopsis Description

WRKY21Probable WRKY transcription factor 21 [Source:UniProtKB/Swiss-Prot;Acc:O04336]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.