Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G04670.1 | CDY57144 | AT3G56800.1 | 15733871 |
| AT3G04670.1 | CDY65072 | AT3G56800.1 | 15733871 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY50747 | Canola | nucleus | 88.18 | 91.09 |
| CDY40667 | Canola | nucleus | 84.34 | 83.02 |
| AT3G04670.1 | Thale cress | nucleus | 86.9 | 82.42 |
| CDX74175 | Canola | nucleus | 84.03 | 81.93 |
| CDX86205 | Canola | nucleus | 73.16 | 67.16 |
| CDY48658 | Canola | nucleus | 72.2 | 67.06 |
| CDY33884 | Canola | nucleus | 71.89 | 66.77 |
| CDY05601 | Canola | nucleus | 70.93 | 65.88 |
| Solyc09g066010.2.1 | Tomato | nucleus | 53.35 | 50.45 |
| GSMUA_Achr10P... | Banana | nucleus | 48.24 | 50.0 |
| VIT_07s0141g00680.t01 | Wine grape | nucleus | 53.67 | 49.41 |
| PGSC0003DMT400038986 | Potato | nucleus | 53.35 | 48.27 |
| CDY29658 | Canola | nucleus | 48.24 | 46.89 |
| CDX97806 | Canola | nucleus | 49.2 | 46.67 |
| Solyc06g008610.2.1 | Tomato | nucleus | 51.44 | 46.26 |
| KRH71315 | Soybean | nucleus | 52.4 | 46.2 |
| KRH67313 | Soybean | nucleus | 49.52 | 45.45 |
| PGSC0003DMT400013632 | Potato | nucleus | 51.12 | 45.07 |
| TraesCS4B01G069500.2 | Wheat | nucleus | 48.88 | 45.0 |
| CDX84824 | Canola | nucleus | 48.56 | 44.97 |
| CDY10749 | Canola | nucleus | 47.92 | 44.91 |
| TraesCS4D01G068200.1 | Wheat | nucleus | 48.88 | 44.87 |
| TraesCS4A01G246000.2 | Wheat | nucleus | 49.84 | 44.7 |
| TraesCS5B01G066400.1 | Wheat | nucleus | 50.48 | 44.51 |
| TraesCS5D01G070700.1 | Wheat | nucleus | 50.48 | 44.38 |
| EER91209 | Sorghum | nucleus | 49.84 | 44.32 |
| CDY23988 | Canola | nucleus | 47.6 | 43.82 |
| CDY47130 | Canola | nucleus | 47.92 | 43.73 |
| TraesCS5A01G059100.1 | Wheat | nucleus | 49.52 | 43.66 |
| Zm00001d033291_P007 | Maize | nucleus | 48.56 | 42.94 |
| Os12t0597700-01 | Rice | nucleus | 48.88 | 42.15 |
| EES17321 | Sorghum | nucleus | 49.52 | 41.78 |
| Zm00001d041397_P001 | Maize | nucleus | 48.88 | 41.69 |
| Zm00001d013709_P003 | Maize | nucleus | 48.24 | 40.92 |
| Os03t0741400-01 | Rice | nucleus | 49.84 | 40.31 |
| KRH32116 | Soybean | extracellular | 50.48 | 40.31 |
| CDY20325 | Canola | nucleus | 35.78 | 39.58 |
| Zm00001d030969_P001 | Maize | nucleus | 47.28 | 39.57 |
| Zm00001d013307_P003 | Maize | nucleus | 49.84 | 39.49 |
| Zm00001d033965_P001 | Maize | nucleus | 49.52 | 39.04 |
| EER93478 | Sorghum | nucleus | 49.2 | 37.93 |
| HORVU4Hr1G011590.2 | Barley | nucleus, plastid | 49.84 | 37.86 |
| CDX72310 | Canola | nucleus | 34.19 | 37.68 |
| CDY36432 | Canola | nucleus | 33.87 | 37.59 |
| CDX89558 | Canola | nucleus | 35.78 | 37.58 |
| CDY60852 | Canola | nucleus | 35.46 | 37.25 |
| HORVU5Hr1G094050.1 | Barley | nucleus | 46.96 | 37.22 |
| CDY13441 | Canola | nucleus | 34.82 | 37.2 |
| CDX68763 | Canola | nucleus | 35.14 | 36.91 |
| TraesCS5D01G390800.1 | Wheat | nucleus | 46.33 | 36.8 |
| CDY38936 | Canola | nucleus | 35.46 | 36.51 |
| TraesCS5A01G381000.1 | Wheat | nucleus | 46.01 | 36.27 |
| TraesCS5B01G384600.1 | Wheat | nucleus | 46.01 | 36.0 |
| CDY45583 | Canola | nucleus | 37.38 | 36.0 |
| CDY23304 | Canola | nucleus | 34.5 | 35.29 |
| CDY03470 | Canola | nucleus | 34.82 | 32.25 |
| CDY10996 | Canola | nucleus | 32.59 | 29.39 |
| CDX92626 | Canola | nucleus | 32.59 | 29.31 |
| CDY34269 | Canola | nucleus | 34.5 | 26.93 |
| CDX71933 | Canola | nucleus | 15.65 | 24.62 |
| CDX90180 | Canola | nucleus | 16.93 | 20.31 |
| CDX99806 | Canola | nucleus | 16.61 | 19.92 |
| CDY07185 | Canola | nucleus | 18.53 | 19.86 |
| CDY01962 | Canola | nucleus | 18.21 | 19.59 |
| CDY69417 | Canola | nucleus | 14.38 | 19.48 |
| CDY50779 | Canola | nucleus | 16.29 | 19.47 |
| CDY48511 | Canola | nucleus | 18.53 | 19.46 |
| CDY49246 | Canola | nucleus | 15.65 | 18.08 |
| CDY00583 | Canola | nucleus | 15.97 | 17.92 |
| CDX89000 | Canola | nucleus | 15.97 | 17.92 |
| CDY59336 | Canola | nucleus | 16.93 | 17.91 |
| CDY10943 | Canola | nucleus | 16.93 | 17.73 |
| CDY44115 | Canola | nucleus | 16.61 | 17.57 |
| CDX94201 | Canola | nucleus | 16.61 | 17.39 |
| CDY41375 | Canola | nucleus | 16.93 | 17.21 |
| CDX76334 | Canola | nucleus | 16.93 | 17.21 |
| CDY27045 | Canola | nucleus | 18.21 | 16.57 |
| CDX96157 | Canola | nucleus | 18.21 | 16.38 |
| CDX77581 | Canola | nucleus | 19.17 | 15.87 |
| CDX98217 | Canola | nucleus | 19.17 | 15.58 |
| CDY52525 | Canola | nucleus | 20.13 | 15.11 |
| CDY09551 | Canola | nucleus | 18.85 | 14.29 |
| CDY43651 | Canola | nucleus | 17.89 | 13.46 |
| CDY72268 | Canola | cytosol, plastid | 0.96 | 2.91 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | GO:A0A078HTI3 | UniProt:A0A078HTI3 | EnsemblPlants:CDY41890 | ProteinID:CDY41890 |
| ProteinID:CDY41890.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00073865001 | InterPro:IPR003657 | InterPro:IPR036576 | PFAM:PF03106 | PFAM:PF10533 | PFscan:PS50811 |
| PANTHER:PTHR31282 | PANTHER:PTHR31282:SF12 | SMART:SM00774 | SUPFAM:SSF118290 | UniParc:UPI0004EE0E36 | InterPro:WRKY_dom |
| InterPro:WRKY_dom_sf | InterPro:Zn-cluster-dom | SEG:seg | : | : | : |
Description
BnaC05g47140DBnaC05g47140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HTI3]
Coordinates
chrLK032510:-:10936..12111
Molecular Weight (calculated)
34683.0 Da
IEP (calculated)
9.367
GRAVY (calculated)
-0.605
Length
313 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDVEAASKL AIESCYGVLN LLSQQQTSSD SKSLMVESRE VVSKFKRVAS LLTSGSGHGK FRRTNNKFSP SFPQHIFLES PVCCGNEVSS DYTQVLAPEP
101: LQMVPASVSY DDVDPRHQLG HPLSHQMCPP PFRPPYQLIH NHQQIAYSRS NSGANLTFDG SGSSCYTPSA SNGSRSFVSS LSMDTSVVDY DRTSFQLTGL
201: SRKMCSGSLK CGSRSKCHCS KKRKHRVKRS IKVPAISNKI ADIPPDEYSW RKYGQKPIKG SPHPRGYYKC SSVRGCPARK HVERCVDETS MLIVTYEGEH
301: NHSRILSSQS AHT
101: LQMVPASVSY DDVDPRHQLG HPLSHQMCPP PFRPPYQLIH NHQQIAYSRS NSGANLTFDG SGSSCYTPSA SNGSRSFVSS LSMDTSVVDY DRTSFQLTGL
201: SRKMCSGSLK CGSRSKCHCS KKRKHRVKRS IKVPAISNKI ADIPPDEYSW RKYGQKPIKG SPHPRGYYKC SSVRGCPARK HVERCVDETS MLIVTYEGEH
301: NHSRILSSQS AHT
001: MEEVEAANRS AIESCHGVLN LLSQRTSDPK SLTVETGEVV SKFKRVASLL TRGLGHGKFR STNKFRSSFP QHIFLESPIC CGNDLSGDYT QVLAPEPLQM
101: VPASAVYNEM EPKHQLGHPS LMLSHKMCVD KSFLELKPPP FRAPYQLIHN HQQIAYSRSN SGVNLKFDGS GSSCYTPSVS NGSRSFVSSL SMDASVTDYD
201: RNSFHLTGLS RGSDQQHTRK MCSGSLKCGS RSKCHCSKKR KLRVKRSIKV PAISNKIADI PPDEYSWRKY GQKPIKGSPH PRGYYKCSSV RGCPARKHVE
301: RCIDETSMLI VTYEGEHNHS RILSSQSAHT
101: VPASAVYNEM EPKHQLGHPS LMLSHKMCVD KSFLELKPPP FRAPYQLIHN HQQIAYSRSN SGVNLKFDGS GSSCYTPSVS NGSRSFVSSL SMDASVTDYD
201: RNSFHLTGLS RGSDQQHTRK MCSGSLKCGS RSKCHCSKKR KLRVKRSIKV PAISNKIADI PPDEYSWRKY GQKPIKGSPH PRGYYKCSSV RGCPARKHVE
301: RCIDETSMLI VTYEGEHNHS RILSSQSAHT
Arabidopsis Description
WRKY39Probable WRKY transcription factor 39 [Source:UniProtKB/Swiss-Prot;Acc:Q9SR07]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.