Factsheet for VIT_07s0141g00680.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0009g01910.t01
VIT_08s0040g00470.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04670.1	VIT_06s0009g01910.t01	AT3G56800.1	15733871
AT3G04670.1	VIT_08s0040g00470.t01	AT3G56800.1	15733871
AT5G28650.1	VIT_06s0009g01910.t01	AT3G56800.1	15733871
AT5G28650.1	VIT_08s0040g00470.t01	AT3G56800.1	15733871

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH71315	Soybean	nucleus	76.18	72.96
Solyc06g008610.2.1	Tomato	nucleus	70.29	68.68
PGSC0003DMT400013632	Potato	nucleus	71.18	68.17
KRH67313	Soybean	nucleus	67.94	67.74
KRH32116	Soybean	extracellular	74.41	64.54
VIT_14s0081g00560.t01	Wine grape	nucleus	68.24	64.09
GSMUA_Achr10P...	Banana	nucleus	55.0	61.92
Bra001117.1-P	Field mustard	nucleus	52.35	55.8
CDY40667	Canola	nucleus	52.06	55.66
AT3G04670.1	Thale cress	nucleus	53.82	55.45
Bra040396.1-P	Field mustard	nucleus	49.12	55.12
AT5G28650.1	Thale cress	nucleus	53.24	54.85
CDY50747	Canola	nucleus	48.82	54.79
CDX74175	Canola	nucleus	51.47	54.52
TraesCS4B01G069500.2	Wheat	nucleus	53.82	53.82
CDY41890	Canola	nucleus	49.41	53.67
TraesCS4D01G068200.1	Wheat	nucleus	53.53	53.37
CDY48658	Canola	nucleus	52.65	53.12
CDX86205	Canola	nucleus	53.24	53.08
Bra010005.1-P	Field mustard	nucleus	53.24	53.08
TraesCS4A01G246000.2	Wheat	nucleus	54.41	53.01
EER91209	Sorghum	nucleus	53.82	51.99
CDY33884	Canola	nucleus	51.47	51.93
Bra020617.1-P	Field mustard	nucleus	51.47	51.93
TraesCS5B01G066400.1	Wheat	nucleus	54.12	51.83
TraesCS5D01G070700.1	Wheat	nucleus	54.12	51.69
CDY05601	Canola	nucleus	51.18	51.63
TraesCS5A01G059100.1	Wheat	nucleus	53.82	51.55
Os12t0597700-01	Rice	nucleus	54.71	51.24
Zm00001d033291_P007	Maize	nucleus	52.94	50.85
Zm00001d013709_P003	Maize	nucleus	52.06	47.97
EES17321	Sorghum	nucleus	52.06	47.71
Zm00001d041397_P001	Maize	nucleus	51.47	47.68
Zm00001d030969_P001	Maize	nucleus	51.76	47.06
Os03t0741400-01	Rice	nucleus	52.94	46.51
HORVU4Hr1G011590.2	Barley	nucleus, plastid	53.82	44.42
Zm00001d013307_P003	Maize	nucleus	51.18	44.05
Zm00001d033965_P001	Maize	nucleus	51.18	43.83
EER93478	Sorghum	nucleus	50.88	42.61
TraesCS5D01G390800.1	Wheat	nucleus	48.53	41.88
HORVU5Hr1G094050.1	Barley	nucleus	48.53	41.77
TraesCS5A01G381000.1	Wheat	nucleus	47.94	41.06
TraesCS5B01G384600.1	Wheat	nucleus	48.24	41.0
VIT_18s0001g10030.t01	Wine grape	nucleus	37.65	40.13
VIT_07s0031g00080.t01	Wine grape	nucleus	38.53	38.99
VIT_11s0052g00450.t01	Wine grape	nucleus	27.35	37.96
VIT_04s0069g00920.t01	Wine grape	nucleus	37.06	37.28
VIT_10s0003g01600.t01	Wine grape	nucleus	17.65	21.58
VIT_07s0005g01520.t01	Wine grape	nucleus	15.0	21.07
VIT_16s0050g01480.t01	Wine grape	mitochondrion	11.18	20.88
VIT_15s0046g02190.t01	Wine grape	nucleus	19.71	19.25
VIT_10s0003g05740.t01	Wine grape	nucleus, plastid	16.47	17.95
VIT_00s2547g00010.t01	Wine grape	nucleus	12.06	17.83
VIT_02s0025g00420.t01	Wine grape	nucleus	16.18	16.72

Protein Annotations

EntrezGene:100257874	wikigene:100257874	MapMan:15.5.22	Gene3D:2.20.25.80	ProteinID:CCB44711	ProteinID:CCB44711.1
UniProt:F6GXM5	EMBL:FN594965	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	EntrezGene:LOC100257874	wikigene:LOC100257874	PFAM:PF03106
PFAM:PF10533	PFscan:PS50811	PANTHER:PTHR31282	PANTHER:PTHR31282:SF12	SMART:SM00774	SUPFAM:SSF118290
UniParc:UPI00015CABAC	ArrayExpress:VIT_07s0141g00680	EnsemblPlantsGene:VIT_07s0141g00680	EnsemblPlants:VIT_07s0141g00680.t01	InterPro:WRKY_dom	InterPro:WRKY_dom_sf
RefSeq:XP_002282258	RefSeq:XP_002282258.1	RefSeq:XP_010651943.1	RefSeq:XP_010651944.1	InterPro:Zn-cluster-dom	SEG:seg

Description

No Description!

Coordinates

chr7:+:381054..383675

Molecular Weight (calculated)

38043.3 Da

IEP (calculated)

10.435

GRAVY (calculated)

-0.826

Length

340 amino acids

Sequence
(BLAST)

001: MEEVEKANRA AVESCNKVLG LLSQAQDQIQ RKKLMVETGE AVVRFNRVVS LLNTGLGHAR VRKSKNFQTP LPHNILLDKP NAKQDHPSKT FQFLHSSSLE
101: KPIQEMGSNA KNTMGLGNPS LELTSNGKSP LQLSQLIPSS TNYQFLHHQQ QQRLQQQMKH QADTMYRRSN SGINLNFDSS SCTPTMSSTR SFISSLSVDG
201: SVANLDGNAF HLIGPARSDQ NSFQHKRKCS RGEEGSVKCG SSGRCHCSKK RKHRVKRSIK VPAISNKLAD IPPDEYSWRK YGQKPIKGSP HPRGYYKCSS
301: MRGCPARKHV ERCLEDPSML IVTYEGEHNH PRLPSQSANQ

Best Arabidopsis Sequence Match ( AT2G30590.1 )
(BLAST)

001: MEEIEGTNRA AVESCHRVLN LLHRSQQQDH VGFEKNLVSE TREAVIRFKR VGSLLSSSVG HARFRRAKKL QSHVSQSLLL DPCQQRTTEV PSSSSQKTPV
101: LRSGFQELSL RQPSDSLTLG TRSFSLNSNA KAPLLQLNQQ TMPPSNYPTL FPVQQQQQQQ QQQQQQEQQQ QQQQQQQQFH ERLQAHHLHQ QQQLQKHQAE
201: LMLRKCNGGI SLSFDNSSCT PTMSSTRSFV SSLSIDGSVA NIEGKNSFHF GVPSSTDQNS LHSKRKCPLK GDEHGSLKCG SSSRCHCAKK RKHRVRRSIR
301: VPAISNKVAD IPPDDYSWRK YGQKPIKGSP YPRGYYKCSS MRGCPARKHV ERCLEDPAML IVTYEAEHNH PKLPSQAITT

Arabidopsis Description

WRKY21Probable WRKY transcription factor 21 [Source:UniProtKB/Swiss-Prot;Acc:O04336]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.