Factsheet for VIT_10s0003g01600.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400073267	Potato	nucleus	64.75	60.2
Solyc02g072190.2.1	Tomato	nucleus	64.03	57.79
GSMUA_Achr7P24840_001	Banana	nucleus	42.09	47.18
GSMUA_Achr4P08360_001	Banana	nucleus	41.73	44.96
GSMUA_Achr8P27790_001	Banana	nucleus	38.85	44.63
GSMUA_Achr3P15690_001	Banana	nucleus	39.57	43.31
GSMUA_Achr4P15540_001	Banana	nucleus	40.29	39.16
VIT_07s0005g01520.t01	Wine grape	nucleus	33.81	38.84
TraesCS3D01G289500.1	Wheat	nucleus	38.49	38.08
HORVU3Hr1G071750.1	Barley	nucleus	38.13	37.72
HORVU3Hr1G069320.3	Barley	nucleus	39.57	37.04
TraesCS3A01G289700.2	Wheat	nucleus	38.13	36.93
TraesCS3D01G281900.1	Wheat	nucleus, plastid	39.57	36.91
TraesCS3A01G281900.1	Wheat	nucleus	39.57	36.91
TraesCS3B01G324400.1	Wheat	nucleus	38.13	36.81
TraesCS3B01G315600.1	Wheat	cytosol	39.21	36.7
Os01t0730700-01	Rice	nucleus	39.93	34.8
Zm00001d043569_P001	Maize	cytosol	35.25	34.15
Zm00001d012746_P001	Maize	nucleus	33.81	33.94
Os01t0750100-03	Rice	nucleus	38.49	33.86
Zm00001d043474_P001	Maize	nucleus	35.61	32.35
EES03563	Sorghum	plastid	36.33	31.66
EES03611	Sorghum	nucleus	34.53	30.97
VIT_10s0003g05740.t01	Wine grape	nucleus, plastid	33.09	29.49
VIT_16s0050g01480.t01	Wine grape	mitochondrion	17.99	27.47
VIT_15s0046g02190.t01	Wine grape	nucleus	28.42	22.7
VIT_02s0025g00420.t01	Wine grape	nucleus	25.9	21.88
VIT_04s0069g00920.t01	Wine grape	nucleus	24.82	20.41
VIT_18s0001g10030.t01	Wine grape	nucleus	22.66	19.75
VIT_07s0031g00080.t01	Wine grape	nucleus	23.02	19.05
VIT_07s0141g00680.t01	Wine grape	nucleus	21.58	17.65
VIT_14s0081g00560.t01	Wine grape	nucleus	21.58	16.57
VIT_11s0052g00450.t01	Wine grape	nucleus	12.59	14.29
VIT_00s2547g00010.t01	Wine grape	nucleus	10.79	13.04

Protein Annotations

EntrezGene:100244564	wikigene:100244564	MapMan:15.5.22	Gene3D:2.20.25.80	ProteinID:CBI30716	ProteinID:CBI30716.3
UniProt:D7TJP4	EMBL:FN595992	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	EntrezGene:LOC100244564	wikigene:LOC100244564	PFAM:PF03106
PFscan:PS50811	PANTHER:PTHR31282	PANTHER:PTHR31282:SF9	SMART:SM00774	SUPFAM:SSF118290	TIGR:TC51732
UniParc:UPI00015CBABF	ArrayExpress:VIT_10s0003g01600	EnsemblPlantsGene:VIT_10s0003g01600	EnsemblPlants:VIT_10s0003g01600.t01	unigene:Vvi.9725	InterPro:WRKY_dom
InterPro:WRKY_dom_sf	RefSeq:XP_002269267	RefSeq:XP_002269267.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr10:+:3008699..3010258

Molecular Weight (calculated)

30940.8 Da

IEP (calculated)

4.883

GRAVY (calculated)

-0.845

Length

278 amino acids

Sequence
(BLAST)

001: MDGRFNSNPF VSEQEEQENS PENSGDSPPS PMFNDAKISS STSSPKRSRR AMQKRVVSVP IKDVEGSRVK GDCAPPSDSW AWRKYGQKPI KGSPYPRGYY
101: RCSSSKGCPA RKQVERSRVD PTMLVVTYSC EHNHPWPASR NHHNTTNPPT TAAATPTPTS APATPPSPKP AIFSSQAEPD PDEKFTDLGE ESLITTEDFT
201: WFSDFESPSS TMLESPIFAE NNVRDADVAM FFPMREEDES LFADLGELPE CSLVFRRGVL EMEEERRRCT VPMCGTTS

Best Arabidopsis Sequence Match ( AT1G29280.1 )
(BLAST)

001: MKRGLDMARS YNDHESSQET GPESPNSSTF NGMKALISSH SPKRSRRSVE KRVVNVPMKE MEGSRHKGDT TPPSDSWAWR KYGQKPIKGS PYPRGYYRCS
101: STKGCPARKQ VERSRDDPTM ILITYTSEHN HPWPLTSSTR NGPKPKPEPK PEPEPEVEPE AEEEDNKFMV LGRGIETTPS CVDEFAWFTE METTSSTILE
201: SPIFSSEKKT AVSGADDVAV FFPMGEEDES LFADLGELPE CSVVFRHRSS VVGSQVEIF

Arabidopsis Description

WRKY65WRKY65 [Source:UniProtKB/TrEMBL;Acc:A0A178W690]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.