Factsheet for VIT_14s0081g00560.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0141g00680.t01	Wine grape	nucleus	64.09	68.24
GSMUA_Achr9P10740_001	Banana	nucleus	48.07	67.97
GSMUA_Achr8P20660_001	Banana	nucleus	47.24	67.59
VIT_18s0001g10030.t01	Wine grape	nucleus	34.53	39.19
VIT_11s0052g00450.t01	Wine grape	nucleus	25.69	37.96
VIT_04s0069g00920.t01	Wine grape	nucleus	35.36	37.87
VIT_07s0031g00080.t01	Wine grape	nucleus	35.08	37.8
VIT_10s0003g01600.t01	Wine grape	nucleus	16.57	21.58
VIT_16s0050g01480.t01	Wine grape	mitochondrion	10.22	20.33
VIT_07s0005g01520.t01	Wine grape	nucleus	13.26	19.83
VIT_00s2547g00010.t01	Wine grape	nucleus	12.15	19.13
VIT_15s0046g02190.t01	Wine grape	nucleus	17.96	18.68
VIT_02s0025g00420.t01	Wine grape	nucleus	16.02	17.63
VIT_10s0003g05740.t01	Wine grape	nucleus, plastid	15.19	17.63

Protein Annotations

EntrezGene:100254726	wikigene:100254726	MapMan:15.5.22	Gene3D:2.20.25.80	EMBL:AM438632	ProteinID:CAN78417
ProteinID:CAN78417.1	ProteinID:CCB58700	ProteinID:CCB58700.1	UniProt:F6HVI7	EMBL:FN596256	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576
EntrezGene:LOC100254726	wikigene:LOC100254726	PFAM:PF03106	PFAM:PF10533	PFscan:PS50811	PANTHER:PTHR31282
PANTHER:PTHR31282:SF12	SMART:SM00774	SUPFAM:SSF118290	TIGR:TC65726	UniParc:UPI00019859FB	ArrayExpress:VIT_14s0081g00560
EnsemblPlantsGene:VIT_14s0081g00560	EnsemblPlants:VIT_14s0081g00560.t01	unigene:Vvi.10171	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	RefSeq:XP_002270614
RefSeq:XP_002270614.1	InterPro:Zn-cluster-dom	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr14:-:8753748..8755749

Molecular Weight (calculated)

41266.3 Da

IEP (calculated)

10.156

GRAVY (calculated)

-0.801

Length

362 amino acids

Sequence
(BLAST)

001: MEGVEEANKS AVESCHRVLS FLCQPQDQVQ YRNLMMETEE AVFKFKRVVS LLNNGFGHER VRKFRRLRSS LPQSIFLETP NYKPNPSPKP LQLLPTNFLE
101: NPLPEIDSKA KSSLQITPKI FLESQASDIV SSVKPPLQIV QQKPSQHYQF LQQQHHHHHH QQQQQQIQRI QFQKQQMKYQ ADMMYSRSNS GINLKFDGSS
201: CTPTMSSTRS FISSLSMDGS VANLDGNSFH LIGVPQLSDP NSHQPRRRCS GRGEDGSVKC GSSGKCHCSK RRKLRVKRSI KVPAISNKVA DIPPDEYSWR
301: KYGQKPIKGS PHPRGYYKCS SMRGCPARKH VERCLEDPSM LIVTYEGEHN HSRLLSSQSA HT

Best Arabidopsis Sequence Match ( AT3G04670.1 )
(BLAST)

001: MEEVEAANRS AIESCHGVLN LLSQRTSDPK SLTVETGEVV SKFKRVASLL TRGLGHGKFR STNKFRSSFP QHIFLESPIC CGNDLSGDYT QVLAPEPLQM
101: VPASAVYNEM EPKHQLGHPS LMLSHKMCVD KSFLELKPPP FRAPYQLIHN HQQIAYSRSN SGVNLKFDGS GSSCYTPSVS NGSRSFVSSL SMDASVTDYD
201: RNSFHLTGLS RGSDQQHTRK MCSGSLKCGS RSKCHCSKKR KLRVKRSIKV PAISNKIADI PPDEYSWRKY GQKPIKGSPH PRGYYKCSSV RGCPARKHVE
301: RCIDETSMLI VTYEGEHNHS RILSSQSAHT

Arabidopsis Description

WRKY39Probable WRKY transcription factor 39 [Source:UniProtKB/Swiss-Prot;Acc:Q9SR07]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.