Factsheet for VIT_10s0003g05740.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G102740.3	Barley	nucleus	47.76	47.76
Solyc02g021680.2.1	Tomato	nucleus	52.24	42.78
KRH36880	Soybean	nucleus	70.19	42.61
PGSC0003DMT400039061	Potato	nucleus	55.45	41.89
KRH11863	Soybean	nucleus	67.95	40.54
Os04t0597300-01	Rice	nucleus	50.0	37.68
GSMUA_Achr9P03020_001	Banana	nucleus	49.36	37.47
Bra041029.1-P	Field mustard	nucleus	48.72	37.35
CDY09551	Canola	nucleus	48.72	36.8
AT2G34830.2	Thale cress	nucleus	47.44	33.95
TraesCS2B01G465000.1	Wheat	nucleus	54.17	33.53
KXG27029	Sorghum	nucleus	54.17	33.47
TraesCS2D01G443000.1	Wheat	nucleus	54.17	33.2
VIT_10s0003g01600.t01	Wine grape	nucleus	29.49	33.09
TraesCS2A01G443800.1	Wheat	nucleus	53.85	33.01
Zm00001d002452_P001	Maize	nucleus	52.88	32.67
VIT_16s0050g01480.t01	Wine grape	mitochondrion	18.91	32.42
Zm00001d051550_P001	Maize	nucleus	48.4	32.4
VIT_07s0005g01520.t01	Wine grape	nucleus	25.0	32.23
TraesCS6B01G294900.1	Wheat	nucleus	49.04	31.68
Os02t0698800-01	Rice	nucleus	50.96	31.42
TraesCS6A01G267500.1	Wheat	nucleus	48.4	31.39
Zm00001d017712_P001	Maize	nucleus	48.4	31.2
TraesCS6D01G247200.1	Wheat	nucleus	47.76	30.98
EES07413	Sorghum	nucleus	48.4	30.38
VIT_15s0046g02190.t01	Wine grape	nucleus	30.77	27.59
Zm00001d026218_P001	Maize	nucleus	38.46	27.46
HORVU6Hr1G067680.3	Barley	nucleus	44.87	24.96
VIT_02s0025g00420.t01	Wine grape	nucleus	25.96	24.62
VIT_04s0069g00920.t01	Wine grape	nucleus	19.87	18.34
VIT_18s0001g10030.t01	Wine grape	nucleus	18.27	17.87
VIT_07s0031g00080.t01	Wine grape	nucleus	18.59	17.26
VIT_07s0141g00680.t01	Wine grape	nucleus	17.95	16.47
VIT_14s0081g00560.t01	Wine grape	nucleus	17.63	15.19
VIT_00s2547g00010.t01	Wine grape	nucleus	10.26	13.91
VIT_11s0052g00450.t01	Wine grape	nucleus	10.58	13.47

Protein Annotations

EntrezGene:100250704	wikigene:100250704	MapMan:15.5.22	Gene3D:2.20.25.80	ProteinID:CCB55894	ProteinID:CCB55894.1
UniProt:F6HM19	EMBL:FN595992	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	EntrezGene:LOC100250704	wikigene:LOC100250704	PFAM:PF03106
PFscan:PS50811	PANTHER:PTHR32096	PANTHER:PTHR32096:SF49	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI000210A446
ArrayExpress:VIT_10s0003g05740	EnsemblPlantsGene:VIT_10s0003g05740	EnsemblPlants:VIT_10s0003g05740.t01	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	RefSeq:XP_002269170
RefSeq:XP_002269170.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr10:-:10756001..10759241

Molecular Weight (calculated)

33833.2 Da

IEP (calculated)

7.784

GRAVY (calculated)

-0.821

Length

312 amino acids

Sequence
(BLAST)

001: MLQISPNARM PISPCESQIV AASPTGIKTS ALAPNDMISG NSSKGCLMDS TALQISSPRN PGIKRRKSQA KKVVCIPAPA AANSRPSGEV VPSDLWAWRK
101: YGQKPIKGSP YPRGYYRCSS SKGCSARKQV ERSRTDPNML VITYTSEHNH PWPTQRNALA GSTRSQPSKN NGASKNSGSC QSTQKATGLK EENKESYNND
201: DMSPIVGGSS TTGASVKEEM GNVEKQLEMD DSEFSEGFPR SYKPAMPDSN QSEDFFADLG EIEADPLNLL FAQGFSSGDH EERESKALDP FSLFDWTGNN
301: SNTSFGEDKR GL

Best Arabidopsis Sequence Match ( AT1G30650.1 )
(BLAST)

001: MCSVSELLDM ENFQGDLTDV VRGIGGHVLS PETPPSNIWP LPLSHPTPSP SDLNINPFGD PFVSMDDPLL QELNSITNSG YFSTVGDNNN NIHNNNGFLV
101: PKVFEEDHIK SQCSIFPRIR ISHSNIIHDS SPCNSPAMSA HVVAAAAAAS PRGIINVDTN SPRNCLLVDG TTFSSQIQIS SPRNLGLKRR KSQAKKVVCI
201: PAPAAMNSRS SGEVVPSDLW AWRKYGQKPI KGSPFPRGYY RCSSSKGCSA RKQVERSRTD PNMLVITYTS EHNHPWPIQR NALAGSTRSS TSSSSNPNPS
301: KPSTANVNSS SIGSQNTIYL PSSTTPPPTL SSSAIKDERG DDMELENVDD DDDNQIAPYR PELHDHQHQP DDFFADLEEL EGDSLSMLLS HGCGGDGKDK
401: TTASDGISNF FGWSGDNNYN NYDDQDSRSL

Arabidopsis Description

WRKY14Probable WRKY transcription factor 14 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA80]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.