Factsheet for VIT_18s0001g10030.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0009g01910.t01
VIT_08s0040g00470.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24240.1	VIT_06s0009g01910.t01	AT3G56800.1	15733871
AT4G24240.1	VIT_08s0040g00470.t01	AT3G56800.1	15733871

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013779.1-P	Field mustard	nucleus	30.72	68.53
VIT_07s0031g00080.t01	Wine grape	nucleus	66.46	63.1
PGSC0003DMT400020517	Potato	nucleus	68.03	61.3
Solyc04g078550.2.1	Tomato	nucleus	67.4	61.25
CDY03470	Canola	nucleus	55.49	52.37
AT4G24240.1	Thale cress	nucleus	57.68	52.12
CDX92626	Canola	nucleus	54.86	50.29
CDY10996	Canola	nucleus	54.23	49.86
Bra019239.1-P	Field mustard	nucleus	54.23	49.71
VIT_11s0052g00450.t01	Wine grape	nucleus	35.42	46.12
VIT_04s0069g00920.t01	Wine grape	nucleus	47.34	44.67
CDY34269	Canola	nucleus	54.55	43.39
VIT_07s0141g00680.t01	Wine grape	nucleus	40.13	37.65
VIT_14s0081g00560.t01	Wine grape	nucleus	39.19	34.53
VIT_10s0003g01600.t01	Wine grape	nucleus	19.75	22.66
VIT_00s2547g00010.t01	Wine grape	nucleus	15.99	22.17
VIT_16s0050g01480.t01	Wine grape	mitochondrion	12.54	21.98
VIT_07s0005g01520.t01	Wine grape	nucleus	15.05	19.83
VIT_10s0003g05740.t01	Wine grape	nucleus, plastid	17.87	18.27
VIT_15s0046g02190.t01	Wine grape	nucleus	18.81	17.24
VIT_02s0025g00420.t01	Wine grape	nucleus	17.24	16.72

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	EMBL:AM448784	ProteinID:CAN61025	ProteinID:CAN61025.1	ProteinID:CBI19480
ProteinID:CBI19480.3	UniProt:E0CPR7	EMBL:FN595227	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005516	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576
PFAM:PF03106	PFAM:PF10533	PFscan:PS50811	PANTHER:PTHR31282	PANTHER:PTHR31282:SF70	SMART:SM00774
SUPFAM:SSF118290	TIGR:TC61184	UniParc:UPI0001BE12CD	ArrayExpress:VIT_18s0001g10030	EnsemblPlantsGene:VIT_18s0001g10030	EnsemblPlants:VIT_18s0001g10030.t01
unigene:Vvi.17730	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	InterPro:Zn-cluster-dom	SEG:seg	:

Description

No Description!

Coordinates

chr18:+:8392053..8393721

Molecular Weight (calculated)

34758.2 Da

IEP (calculated)

9.280

GRAVY (calculated)

-0.502

Length

319 amino acids

Sequence
(BLAST)

001: MAVELMMGYA NDSFAAKMED NALQEAASAG IQSVEKLVKL LSQCQQQKQT TTSLEIDIDC TAVADMAVTK FKRVISLLDR TRTGHARFRR APLVPPQQPP
101: QDTDTPVPVS HHQPAEDKQT SVSKIYCPTP VHPIEKKESM TTINFTTSHS VSAPNSFVSS LTGDTESVQP SLSSGFHISN LSQVSSAGRP PLSSSSLKRK
201: CSSMDDAGAK CGSSFGRCHC SKKRKLRVKR VVRVPAISTK MADIPPDDFS WRKYGQKPIK GSPHPRGYYK CSSVRGCPAR KHVERALDDP TVLTVTYEGD
301: HNHSQSITDA TAALVLESS

Best Arabidopsis Sequence Match ( AT4G24240.1 )
(BLAST)

001: MTVELMMSSY SGGGGGGDGF PAIAAAAKME DTALREAASA GIHGVEEFLK LIGQSQQPTE KSQTEITAVT DVAVNSFKKV ISLLGRSRTG HARFRRAPAS
101: TQTPFKQTPV VEEEVEVEEK KPETSSVLTK QKTEQYHGGG SAFRVYCPTP IHRRPPLSHN NNNNQNQTKN GSSSSSPPML ANGAPSTINF APSPPVSATN
201: SFMSSHRCDT DSTHMSSGFE FTNPSQLSGS RGKPPLSSAS LKRRCNSSPS SRCHCSKKRK SRVKRVIRVP AVSSKMADIP SDEFSWRKYG QKPIKGSPHP
301: RGYYKCSSVR GCPARKHVER ALDDAMMLIV TYEGDHNHAL VLETTTMNHD KTL

Arabidopsis Description

WRKY7Probable WRKY transcription factor 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9STX0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.