Factsheet for VIT_04s0069g00920.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0009g01910.t01
VIT_08s0040g00470.t01
VIT_13s0019g00340.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24570.1	VIT_06s0009g01910.t01	AT3G56800.1	15733871
AT2G24570.1	VIT_08s0040g00470.t01	AT3G56800.1	15733871
AT2G24570.1	VIT_13s0019g00340.t01	AT5G13810.1	21798944
AT4G31550.1	VIT_06s0009g01910.t01	AT3G56800.1	15733871
AT4G31550.1	VIT_08s0040g00470.t01	AT3G56800.1	15733871

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61946	Soybean	nucleus, plastid	58.58	70.97
KRH52606	Soybean	nucleus	62.13	70.0
VIT_11s0052g00450.t01	Wine grape	nucleus	50.3	69.39
CDY20325	Canola	nucleus	55.33	66.08
KRH16144	Soybean	nucleus	61.24	65.51
CDX72310	Canola	nucleus	54.73	65.14
KRH04945	Soybean	nucleus	60.06	64.24
CDY60852	Canola	nucleus	56.51	64.09
CDY36432	Canola	nucleus	53.25	63.83
CDX68763	Canola	nucleus	55.62	63.09
AT2G24570.1	Thale cress	nucleus	59.17	62.31
CDY13441	Canola	nucleus	53.85	62.12
Bra011282.1-P	Field mustard	nucleus	59.17	62.11
CDY23304	Canola	nucleus	56.21	62.09
CDY45583	Canola	nucleus	58.88	61.23
AT4G31550.1	Thale cress	nucleus	58.58	60.92
Bra032084.1-P	Field mustard	nucleus	58.28	60.62
Bra010231.1-P	Field mustard	nucleus	58.88	59.94
Bra023998.1-P	Field mustard	nucleus	57.99	59.76
PGSC0003DMT400075531	Potato	nucleus	54.44	58.97
KRH37367	Soybean	nucleus	50.59	57.77
PGSC0003DMT400024632	Potato	nucleus	56.51	57.19
Solyc08g006320.2.1	Tomato	nucleus	54.44	56.1
GSMUA_Achr6P03810_001	Banana	nucleus	42.6	56.03
Os04t0605100-01	Rice	nucleus	49.7	54.37
Zm00001d002405_P001	Maize	nucleus	47.93	54.36
TraesCS2B01G454300.1	Wheat	nucleus	50.3	54.31
HORVU4Hr1G012580.5	Barley	nucleus, plastid	24.56	54.25
KRH12362	Soybean	nucleus	46.75	53.92
EES11384	Sorghum	nucleus	49.7	53.33
Zm00001d026252_P001	Maize	nucleus	49.7	53.16
TraesCS2D01G431000.1	Wheat	nucleus	50.89	53.09
TraesCS2A01G433000.1	Wheat	nucleus	51.18	52.74
Solyc12g096350.1.1	Tomato	nucleus	50.0	50.0
VIT_07s0031g00080.t01	Wine grape	nucleus	47.63	47.92
VIT_18s0001g10030.t01	Wine grape	nucleus	44.67	47.34
HORVU5Hr1G122800.4	Barley	plastid	32.84	43.02
HORVU5Hr1G052630.2	Barley	plastid	28.99	38.89
VIT_07s0141g00680.t01	Wine grape	nucleus	37.28	37.06
VIT_14s0081g00560.t01	Wine grape	nucleus	37.87	35.36
HORVU3Hr1G097420.1	Barley	nucleus	28.7	30.41
HORVU3Hr1G039500.1	Barley	plastid	27.81	29.65
VIT_10s0003g01600.t01	Wine grape	nucleus	20.41	24.82
VIT_16s0050g01480.t01	Wine grape	mitochondrion	11.54	21.43
VIT_07s0005g01520.t01	Wine grape	nucleus	15.09	21.07
VIT_15s0046g02190.t01	Wine grape	nucleus	21.01	20.4
VIT_10s0003g05740.t01	Wine grape	nucleus, plastid	18.34	19.87
VIT_02s0025g00420.t01	Wine grape	nucleus	18.93	19.45
VIT_00s2547g00010.t01	Wine grape	nucleus	12.72	18.7

Protein Annotations

EntrezGene:100254807	wikigene:100254807	MapMan:15.5.22	Gene3D:2.20.25.80	ProteinID:CCB48880	ProteinID:CCB48880.1
UniProt:F6H9I7	EMBL:FN595500	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	EntrezGene:LOC100254807	wikigene:LOC100254807	PFAM:PF03106
PFAM:PF10533	PFscan:PS50811	PANTHER:PTHR31282	PANTHER:PTHR31282:SF18	SMART:SM00774	SUPFAM:SSF118290
TIGR:TC53072	UniParc:UPI000172E1E6	ArrayExpress:VIT_04s0069g00920	EnsemblPlantsGene:VIT_04s0069g00920	EnsemblPlants:VIT_04s0069g00920.t01	unigene:Vvi.18970
InterPro:WRKY_dom	InterPro:WRKY_dom_sf	RefSeq:XP_002262775	RefSeq:XP_002262775.1	InterPro:Zn-cluster-dom	SEG:seg

Description

No Description!

Coordinates

chr4:-:9363044..9365026

Molecular Weight (calculated)

36571.2 Da

IEP (calculated)

9.894

GRAVY (calculated)

-0.501

Length

338 amino acids

Sequence
(BLAST)

001: MAVELLGFSK MDEQIAIQDA ASAGLKSMEH LIRMLSHQTN QNHNMNQLDC REITDYTVSK FKKVISILNR TGHARFRRGP VSSSDSPSSS TSSVAPQTHA
101: LTPAPVTSLP VPPAAPPPAS FVQRQSLTLD FTKPNLVSSN PVSSDVVSTS QFSKESFGLS QPMSSATNSS FMSSITGDGS VSNGKQGSSL FLAPAPAVSA
201: GKPPLSSSCR KRCHEHDHSD DISGKYSSSG RCHCSKRRRS RVKKTIRVPA ISSKIADIPA DEYSWRKYGQ KPIKGSPYPR GYYKCSSMRG CPARKHVERA
301: SDDPAMLIVT YEGEHSHSQV AMQEMIPHGG VGLVFEST

Best Arabidopsis Sequence Match ( AT4G31550.1 )
(BLAST)

001: MAVDLMRFPK IDDQTAIQEA ASQGLQSMEH LIRVLSNRPE QQHNVDCSEI TDFTVSKFKT VISLLNRTGH ARFRRGPVHS TSSAASQKLQ SQIVKNTQPE
101: APIVRTTTNH PQIVPPPSSV TLDFSKPSIF GTKAKSAELE FSKENFSVSL NSSFMSSAIT GDGSVSNGKI FLASAPLQPV NSSGKPPLAG HPYRKRCLEH
201: EHSESFSGKV SGSAYGKCHC KKSRKNRMKR TVRVPAISAK IADIPPDEYS WRKYGQKPIK GSPHPRGYYK CSTFRGCPAR KHVERALDDP AMLIVTYEGE
301: HRHNQSAMQE NISSSGINDL VFASA

Arabidopsis Description

WRKY11Probable WRKY transcription factor 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9SV15]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.