Factsheet for Solyc08g006320.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc03g078380.1.1
Solyc04g010070.2.1
Solyc05g054980.2.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g005270.1.1
Solyc11g072240.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24570.1	Solyc01g008950.2.1	AT3G56800.1	15733871
AT2G24570.1	Solyc10g077010.1.1	AT3G56800.1	15733871
AT2G24570.1	Solyc10g081170.1.1	AT3G56800.1	15733871
AT2G24570.1	Solyc11g072240.1.1	AT3G56800.1	15733871
AT2G24570.1	Solyc12g099990.1.1	AT3G56800.1	15733871
AT2G24570.1	Solyc03g078380.1.1	AT5G13810.1	21798944
AT2G24570.1	Solyc11g005270.1.1	AT5G13810.1	21798944
AT2G24570.1	Solyc04g010070.2.1	AT5G28900.1	21798944
AT2G24570.1	Solyc05g054980.2.1	AT5G28900.1	21798944
AT4G31550.1	Solyc01g008950.2.1	AT3G56800.1	15733871
AT4G31550.1	Solyc10g077010.1.1	AT3G56800.1	15733871
AT4G31550.1	Solyc10g081170.1.1	AT3G56800.1	15733871
AT4G31550.1	Solyc11g072240.1.1	AT3G56800.1	15733871
AT4G31550.1	Solyc12g099990.1.1	AT3G56800.1	15733871

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400024632	Potato	nucleus	95.73	94.01
GSMUA_Achr7P15930_001	Banana	nucleus	48.48	56.38
VIT_11s0052g00450.t01	Wine grape	nucleus	42.07	56.33
VIT_04s0069g00920.t01	Wine grape	nucleus	56.1	54.44
CDY20325	Canola	nucleus	46.95	54.42
GSMUA_Achr10P...	Banana	nucleus	43.6	53.56
CDX72310	Canola	nucleus	46.34	53.52
GSMUA_Achr3P05670_001	Banana	nucleus	44.82	53.26
CDY60852	Canola	nucleus	47.87	52.68
GSMUA_Achr5P21910_001	Banana	nucleus	40.55	52.16
CDX68763	Canola	nucleus	47.26	52.01
CDY13441	Canola	nucleus	46.34	51.88
Zm00001d002405_P001	Maize	nucleus	46.95	51.68
KRH02746	Soybean	nucleus	50.0	51.25
CDY36432	Canola	nucleus	43.9	51.06
GSMUA_Achr5P04870_001	Banana	nucleus	46.34	51.01
CDY23304	Canola	nucleus	47.56	50.98
Os04t0605100-01	Rice	nucleus	47.87	50.81
TraesCS2D01G269200.1	Wheat	nucleus	48.48	50.8
Bra011282.1-P	Field mustard	nucleus	49.7	50.62
KRH19120	Soybean	nucleus	50.0	50.62
AT2G24570.1	Thale cress	nucleus	49.39	50.47
AT4G31550.1	Thale cress	nucleus	49.7	50.15
Zm00001d026252_P001	Maize	nucleus	48.17	50.0
Solyc12g096350.1.1	Tomato	nucleus	51.22	49.7
TraesCS2A01G270200.2	Wheat	nucleus	48.48	49.69
TraesCS5D01G382600.1	Wheat	nucleus	45.43	49.67
CDY45583	Canola	nucleus	49.09	49.54
TraesCS5B01G375100.1	Wheat	nucleus	45.12	49.5
GSMUA_Achr9P22950_001	Banana	nucleus	42.38	49.47
EES11384	Sorghum	nucleus	47.26	49.21
Os04t0287400-01	Rice	nucleus	48.78	49.08
Bra023998.1-P	Field mustard	nucleus	48.78	48.78
Bra032084.1-P	Field mustard	nucleus	48.17	48.62
TraesCS2B01G454300.1	Wheat	nucleus	46.34	48.56
Bra010231.1-P	Field mustard	nucleus	49.09	48.49
GSMUA_Achr6P03810_001	Banana	nucleus	37.8	48.25
TraesCS5A01G060200.1	Wheat	nucleus	43.29	48.14
GSMUA_Achr3P00510_001	Banana	nucleus	38.72	48.11
TraesCS5B01G067700.1	Wheat	nucleus	43.6	47.99
TraesCS5D01G071800.1	Wheat	nucleus	43.29	47.97
GSMUA_Achr4P20600_001	Banana	nucleus	41.16	47.87
HORVU4Hr1G012580.5	Barley	nucleus, plastid	22.26	47.71
TraesCS5A01G373100.1	Wheat	nucleus	43.29	47.65
GSMUA_Achr1P23560_001	Banana	nucleus	43.9	47.52
Zm00001d004086_P001	Maize	nucleus	47.87	47.43
TraesCS2D01G431000.1	Wheat	nucleus	46.65	47.22
HORVU5Hr1G092770.2	Barley	mitochondrion	42.99	47.16
TraesCS2A01G433000.1	Wheat	nucleus	46.65	46.65
Zm00001d024376_P001	Maize	nucleus	43.6	45.98
EES14755	Sorghum	nucleus	43.9	45.28
HORVU5Hr1G015120.1	Barley	nucleus	40.85	44.37
Zm00001d050195_P001	Maize	nucleus	41.16	44.12
Os08t0235800-00	Rice	nucleus	44.82	42.73
Os02t0462800-01	Rice	nucleus	32.93	42.69
GSMUA_Achr3P27880_001	Banana	nucleus	35.37	42.18
OQU84894	Sorghum	nucleus	36.28	39.8
HORVU5Hr1G122800.4	Barley	plastid	30.79	39.15
Solyc04g078550.2.1	Tomato	nucleus	41.77	39.03
Solyc02g093050.2.1	Tomato	nucleus	38.72	38.96
Zm00001d016457_P001	Maize	nucleus	35.37	35.69
HORVU5Hr1G052630.2	Barley	plastid	25.61	33.33
Solyc09g066010.2.1	Tomato	nucleus	33.54	33.23
Solyc06g008610.2.1	Tomato	nucleus	32.93	31.03
HORVU3Hr1G039500.1	Barley	plastid	26.22	27.13
HORVU3Hr1G097420.1	Barley	nucleus	25.61	26.33
Solyc10g011910.2.1	Tomato	nucleus	20.73	21.86
Solyc07g055280.2.1	Tomato	nucleus	17.99	21.45
Solyc02g072190.2.1	Tomato	nucleus	20.12	21.43
Solyc10g007970.1.1	Tomato	nucleus	15.85	20.39
Solyc01g079360.2.1	Tomato	mitochondrion, nucleus	14.33	19.58
Solyc01g095100.2.1	Tomato	nucleus	20.73	19.15
Solyc08g081610.2.1	Tomato	nucleus	17.38	18.81
Solyc02g021680.2.1	Tomato	nucleus	21.34	18.37

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	UniProt:K4CIC1	PFAM:PF03106	PFAM:PF10533
PFscan:PS50811	PANTHER:PTHR31282	PANTHER:PTHR31282:SF15	SMART:SM00774	SUPFAM:SSF118290	EnsemblPlantsGene:Solyc08g006320.2
EnsemblPlants:Solyc08g006320.2.1	UniParc:UPI000276BE6A	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	InterPro:Zn-cluster-dom	SEG:seg

Description

No Description!

Coordinates

chr8:-:985013..986480

Molecular Weight (calculated)

35715.5 Da

IEP (calculated)

10.158

GRAVY (calculated)

-0.535

Length

328 amino acids

Sequence
(BLAST)

001: MAVDLLNYSN LNEQLALQEA ATAGLKSMDN LIRFVSFQQQ QNQTVQPDCR EITDYTVSNF RKVITILNRT GHARFRRSPV QVTDDSSTAL TLSPLTNPAE
101: ETVPAVKVPV EKYQSKALTL DFTKRKVGKS IGCEAVPVAS STTSSSFMST ITGEGSVSNG KVFSSMSLPP RPPVSSGKPP IAGKRCRDHE LSDEFSGRTS
201: SSGKCQCKKR KSRVKKVIRV PAISSKTADI PADEYSWRKY GQKPIKGSPY PRGYYRCSSV RGCPARKHVE RATDDPGMLV VTYGGEHRHV QTTISGNVTG
301: AGAGSSGERM MAFELTGQKN GERLGLEI

Best Arabidopsis Sequence Match ( AT4G31550.2 )
(BLAST)

001: MAVDLMRFPK IDDQTAIQEA ASQGLQSMEH LIRVLSNRPE QQHNVDCSEI TDFTVSKFKT VISLLNRTGH ARFRRGPVHS TSSAASQKLQ SQIVKNTQPE
101: APIVRTTTNH PQIVPPPSSV TLDFSKPSIF GTKAKSAELE FSKENFSVSL NSSFMSSAIT GDGSVSNGKI FLASAPLQPV NSSGKPPLAG HPYRKRCLEH
201: EHSESFSGKV SGSAYGKCHC KKRKNRMKRT VRVPAISAKI ADIPPDEYSW RKYGQKPIKG SPHPRGYYKC STFRGCPARK HVERALDDPA MLIVTYEGEH
301: RHNQSAMQEN ISSSGINDLV FASA

Arabidopsis Description

WRKY11Probable WRKY transcription factor 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9SV15]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.