Factsheet for Solyc01g095100.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400000215	Potato	nucleus	97.18	98.01
Solyc10g011910.2.1	Tomato	nucleus	56.62	64.63
VIT_15s0046g02190.t01	Wine grape	nucleus	54.08	55.17
Bra037368.1-P	Field mustard	nucleus	43.38	51.68
CDY07185	Canola	nucleus	42.25	51.37
CDY48511	Canola	nucleus	43.1	51.34
KRH40377	Soybean	nucleus	50.14	51.15
KRH00856	Soybean	nucleus	49.86	50.43
AT4G01250.1	Thale cress	nucleus	41.41	49.33
CDY01962	Canola	nucleus	39.44	48.11
KRH06582	Soybean	nucleus	44.79	47.46
GSMUA_Achr10P...	Banana	nucleus	35.49	42.0
GSMUA_Achr10P...	Banana	nucleus	36.06	41.97
GSMUA_Achr8P19810_001	Banana	nucleus	37.46	38.0
GSMUA_Achr7P14300_001	Banana	nucleus	30.99	35.37
Solyc08g081610.2.1	Tomato	nucleus	26.2	30.69
Solyc01g079360.2.1	Tomato	mitochondrion, nucleus	16.9	25.0
Solyc07g055280.2.1	Tomato	nucleus	19.15	24.73
GSMUA_Achr10P...	Banana	plastid	31.27	24.72
Solyc02g072190.2.1	Tomato	nucleus	21.41	24.68
Solyc02g021680.2.1	Tomato	nucleus	25.35	23.62
Solyc10g007970.1.1	Tomato	nucleus	16.34	22.75
Solyc08g006320.2.1	Tomato	nucleus	19.15	20.73
Solyc02g093050.2.1	Tomato	nucleus	18.87	20.55
Solyc09g066010.2.1	Tomato	nucleus	18.59	19.94
Solyc06g008610.2.1	Tomato	nucleus	18.59	18.97
Solyc04g078550.2.1	Tomato	nucleus	18.59	18.8
Solyc12g096350.1.1	Tomato	nucleus	17.75	18.64

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	UniProt:K4AZP9	PFAM:PF03106	PFscan:PS50811
PANTHER:PTHR32096	PANTHER:PTHR32096:SF35	SMART:SM00774	SUPFAM:SSF118290	EnsemblPlantsGene:Solyc01g095100.2	EnsemblPlants:Solyc01g095100.2.1
UniParc:UPI0002768D5D	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:+:86498886..86500479

Molecular Weight (calculated)

39037.8 Da

IEP (calculated)

6.043

GRAVY (calculated)

-0.831

Length

355 amino acids

Sequence
(BLAST)

001: MEEDWDLHAV VRGCAASSTA AAAAATTTAT TNSCCSSFQP RQDGNFFSFQ DPFVPRFDNP ISDFEELHNL YKPFFPKAQQ IPLSPQNNTN NIPISPLSVL
101: GGLQDLSPQQ TLKQQQHIHQ LNSTRLTQPK QSPLSAYGST TTSASHVQSP RPKRRKNQLK KVCQVPAEGL SSDMWSWRKY GQKPIKGSPY PRGYYRCSTS
201: KGCLARKQVE RNRSDPNMFI VTYTAEHNHP MPTHRNSLAG STRQKPANSE AGTVSDSNKP TSSSPVSSPA CHSPATEKQE SSRDEREDIF EDDDDEFGSS
301: NMGLDNMEPA DDDFFEGLDE LAAQTTGDCF SDNFPGSMQL PWMSNNATTT AAGGV

Best Arabidopsis Sequence Match ( AT4G01250.1 )
(BLAST)

001: MADDWDLHAV VRGCSAVSSS ATTTVYSPGV SSHTNPIFTV GRQSNAVSFG EIRDLYTPFT QESVVSSFSC INYPEEPRKP QNQKRPLSLS ASSGSVTSKP
101: SGSNTSRSKR RKIQHKKVCH VAAEALNSDV WAWRKYGQKP IKGSPYPRGY YRCSTSKGCL ARKQVERNRS DPKMFIVTYT AEHNHPAPTH RNSLAGSTRQ
201: KPSDQQTSKS PTTTIATYSS SPVTSADEFV LPVEDHLAVG DLDGEEDLLS LSDTVVSDDF FDGLEEFAAG DSFSGNSAPA SFDLSWVVNS AATTTGGI

Arabidopsis Description

WRKY22WRKY transcription factor 22 [Source:UniProtKB/Swiss-Prot;Acc:O04609]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.