Factsheet for Solyc02g093050.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g072240.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G23320.1	Solyc01g008950.2.1	AT3G56800.1	15733871
AT2G23320.1	Solyc10g077010.1.1	AT3G56800.1	15733871
AT2G23320.1	Solyc10g081170.1.1	AT3G56800.1	15733871
AT2G23320.1	Solyc11g072240.1.1	AT3G56800.1	15733871
AT2G23320.1	Solyc12g099990.1.1	AT3G56800.1	15733871

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400064256	Potato	nucleus	96.01	96.6
VIT_07s0031g00080.t01	Wine grape	nucleus	68.4	66.37
KRH28430	Soybean	nucleus	64.42	65.42
KRH77042	Soybean	nucleus	64.42	65.42
KRH57965	Soybean	nucleus	63.5	61.98
KRH04545	Soybean	nucleus	62.27	61.14
Solyc04g078550.2.1	Tomato	nucleus	60.12	55.84
CDY38936	Canola	nucleus	49.08	52.63
CDX89558	Canola	nucleus	47.24	51.68
AT2G23320.1	Thale cress	nucleus	49.39	50.79
Bra032174.1-P	Field mustard	nucleus	49.08	50.16
Solyc08g006320.2.1	Tomato	nucleus	38.96	38.72
Solyc09g066010.2.1	Tomato	nucleus	38.96	38.37
Solyc12g096350.1.1	Tomato	nucleus	38.65	37.28
Solyc06g008610.2.1	Tomato	nucleus	38.34	35.92
Solyc10g007970.1.1	Tomato	nucleus	17.48	22.35
Solyc10g011910.2.1	Tomato	nucleus	20.25	21.22
Solyc07g055280.2.1	Tomato	nucleus	17.48	20.73
Solyc01g079360.2.1	Tomato	mitochondrion, nucleus	15.03	20.42
Solyc02g072190.2.1	Tomato	nucleus	18.71	19.81
Solyc01g095100.2.1	Tomato	nucleus	20.55	18.87
Solyc08g081610.2.1	Tomato	nucleus	17.18	18.48
Solyc02g021680.2.1	Tomato	nucleus	19.02	16.27

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	UniProt:K4BDA1	PFAM:PF03106	PFAM:PF10533
PFscan:PS50811	PANTHER:PTHR31282	PANTHER:PTHR31282:SF70	SMART:SM00774	SUPFAM:SSF118290	EnsemblPlantsGene:Solyc02g093050.2
EnsemblPlants:Solyc02g093050.2.1	UniParc:UPI0002768309	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	InterPro:Zn-cluster-dom	SEG:seg

Description

No Description!

Coordinates

chr2:+:53997577..53999489

Molecular Weight (calculated)

36207.0 Da

IEP (calculated)

10.146

GRAVY (calculated)

-0.611

Length

326 amino acids

Sequence
(BLAST)

001: MAVELMMDYR STRNNNNTNC INFVAKLEEK SVVQEAASGL ESVEKLIRLL SQSQSQQIQQ QNKSPMEIEM VADAAVTKFK KVISLLDRNR TGHARFRRAP
101: LANNNSPLPS NSSKDFVDTK VYSPTPIQQV PLITYDHFNP LVPKTISFSY SPEMSRTNSF NISSLTGETE SKQHSSSNSA FQMTNLSSQV SNSAGKPPLS
201: SSSLKRKCSL SENAVSGKCS GSSGRCHCSK RRKLRLKRVV RVPAISMKLS DIPPDDYSWR KYGQKPIKGS PHPRGYYKCS SVRGCPARKH VERALDDPTM
301: LIVTYEGEHN HSLSVAETSS LILESS

Best Arabidopsis Sequence Match ( AT4G24240.1 )
(BLAST)

001: MTVELMMSSY SGGGGGGDGF PAIAAAAKME DTALREAASA GIHGVEEFLK LIGQSQQPTE KSQTEITAVT DVAVNSFKKV ISLLGRSRTG HARFRRAPAS
101: TQTPFKQTPV VEEEVEVEEK KPETSSVLTK QKTEQYHGGG SAFRVYCPTP IHRRPPLSHN NNNNQNQTKN GSSSSSPPML ANGAPSTINF APSPPVSATN
201: SFMSSHRCDT DSTHMSSGFE FTNPSQLSGS RGKPPLSSAS LKRRCNSSPS SRCHCSKKRK SRVKRVIRVP AVSSKMADIP SDEFSWRKYG QKPIKGSPHP
301: RGYYKCSSVR GCPARKHVER ALDDAMMLIV TYEGDHNHAL VLETTTMNHD KTL

Arabidopsis Description

WRKY7Probable WRKY transcription factor 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9STX0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.