Factsheet for PGSC0003DMT400064256

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400014123
PGSC0003DMT400018569
PGSC0003DMT400046278
PGSC0003DMT400054299
PGSC0003DMT400058435
PGSC0003DMT400070437
PGSC0003DMT400097662

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G23320.1	PGSC0003DMT400014123	AT3G56800.1	15733871
AT2G23320.1	PGSC0003DMT400018569	AT3G56800.1	15733871
AT2G23320.1	PGSC0003DMT400046278	AT3G56800.1	15733871
AT2G23320.1	PGSC0003DMT400054299	AT3G56800.1	15733871
AT2G23320.1	PGSC0003DMT400058435	AT3G56800.1	15733871
AT2G23320.1	PGSC0003DMT400070437	AT3G56800.1	15733871
AT2G23320.1	PGSC0003DMT400097662	AT3G56800.1	15733871

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g093050.2.1	Tomato	nucleus	96.6	96.01
PGSC0003DMT400065506	Potato	nucleus	71.6	69.46
VIT_07s0031g00080.t01	Wine grape	nucleus	68.83	66.37
KRH28430	Soybean	nucleus	64.81	65.42
KRH77042	Soybean	nucleus	64.81	65.42
KRH57965	Soybean	nucleus	64.81	62.87
KRH04545	Soybean	nucleus	62.96	61.45
PGSC0003DMT400020517	Potato	nucleus	61.11	55.93
CDY38936	Canola	nucleus	49.69	52.96
CDX89558	Canola	nucleus	47.84	52.01
AT2G23320.1	Thale cress	nucleus	50.0	51.1
Bra032174.1-P	Field mustard	nucleus	49.69	50.47
PGSC0003DMT400075531	Potato	nucleus	40.43	41.99
PGSC0003DMT400024632	Potato	nucleus	40.12	38.92
PGSC0003DMT400038986	Potato	nucleus	38.58	36.13
PGSC0003DMT400013632	Potato	nucleus	37.96	34.65
PGSC0003DMT400027378	Potato	nucleus	16.05	25.0
PGSC0003DMT400052637	Potato	nucleus	17.9	22.66
PGSC0003DMT400073267	Potato	nucleus	18.83	20.4
PGSC0003DMT400023272	Potato	mitochondrion, nucleus	14.81	19.67
PGSC0003DMT400000215	Potato	nucleus	20.99	19.32
PGSC0003DMT400032091	Potato	nucleus	16.98	17.92
PGSC0003DMT400039061	Potato	nucleus	19.44	15.25

Protein Annotations

EntrezGene:102579359	MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	UniProt:M1CC13	PFAM:PF03106
PFAM:PF10533	EnsemblPlantsGene:PGSC0003DMG400024961	PGSC:PGSC0003DMG400024961	EnsemblPlants:PGSC0003DMT400064256	PFscan:PS50811	PANTHER:PTHR31282
PANTHER:PTHR31282:SF70	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI000296FC0E	InterPro:WRKY_dom	InterPro:WRKY_dom_sf
RefSeq:XP_006339860.1	InterPro:Zn-cluster-dom	SEG:seg	:	:	:

Description

WRKY domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400024961]

Coordinates

chr2:+:43419448..43420977

Molecular Weight (calculated)

36016.9 Da

IEP (calculated)

10.215

GRAVY (calculated)

-0.572

Length

324 amino acids

Sequence
(BLAST)

001: MAVELMMDYR NNRNSTTNCI NFVAKLEEKS VVQEAASGLE SVEKLIRLLS QTQSQQIQQR NKSPMEIEMV ADAAVTKFKK VISLLDRNRT GHARFRRAPL
101: ASANPLPMNS SKDFVDTKVY SPTPIQQVPL INYDHFNPLV PKTISFSYSP EMSRTNSFNI SSLTGETESK QHSSSNSAFQ ITNLSSQVSN SAGKPPLSSS
201: SLKRKCSLSE NAVSGKCSGS SGRCHCSKRR KLRLKRVVRV PAISMKLSDI PPDDYSWRKY GQKPIKGSPH PRGYYKCSSV RGCPARKHVE RALDDPTMLI
301: VTYEGEHNHS LSVAETSSLI LESS

Best Arabidopsis Sequence Match ( AT4G24240.1 )
(BLAST)

001: MTVELMMSSY SGGGGGGDGF PAIAAAAKME DTALREAASA GIHGVEEFLK LIGQSQQPTE KSQTEITAVT DVAVNSFKKV ISLLGRSRTG HARFRRAPAS
101: TQTPFKQTPV VEEEVEVEEK KPETSSVLTK QKTEQYHGGG SAFRVYCPTP IHRRPPLSHN NNNNQNQTKN GSSSSSPPML ANGAPSTINF APSPPVSATN
201: SFMSSHRCDT DSTHMSSGFE FTNPSQLSGS RGKPPLSSAS LKRRCNSSPS SRCHCSKKRK SRVKRVIRVP AVSSKMADIP SDEFSWRKYG QKPIKGSPHP
301: RGYYKCSSVR GCPARKHVER ALDDAMMLIV TYEGDHNHAL VLETTTMNHD KTL

Arabidopsis Description

WRKY7Probable WRKY transcription factor 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9STX0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.