Factsheet for VIT_07s0031g00080.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0009g01910.t01
VIT_08s0040g00470.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G23320.1	VIT_06s0009g01910.t01	AT3G56800.1	15733871
AT2G23320.1	VIT_08s0040g00470.t01	AT3G56800.1	15733871

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77042	Soybean	nucleus	70.24	73.52
KRH28430	Soybean	nucleus	68.75	71.96
PGSC0003DMT400064256	Potato	nucleus	66.37	68.83
Solyc02g093050.2.1	Tomato	nucleus	66.37	68.4
VIT_18s0001g10030.t01	Wine grape	nucleus	63.1	66.46
KRH57965	Soybean	nucleus	65.77	66.17
KRH04545	Soybean	nucleus	65.18	65.96
PGSC0003DMT400065506	Potato	nucleus	61.01	61.38
CDY38936	Canola	nucleus	48.21	53.29
AT2G23320.1	Thale cress	nucleus	49.4	52.37
CDX89558	Canola	nucleus	46.43	52.35
Bra032174.1-P	Field mustard	nucleus	48.21	50.78
VIT_11s0052g00450.t01	Wine grape	nucleus	35.12	48.16
VIT_04s0069g00920.t01	Wine grape	nucleus	47.92	47.63
VIT_07s0141g00680.t01	Wine grape	nucleus	38.99	38.53
VIT_14s0081g00560.t01	Wine grape	nucleus	37.8	35.08
VIT_10s0003g01600.t01	Wine grape	nucleus	19.05	23.02
VIT_16s0050g01480.t01	Wine grape	mitochondrion	11.61	21.43
VIT_07s0005g01520.t01	Wine grape	nucleus	14.88	20.66
VIT_00s2547g00010.t01	Wine grape	nucleus	13.69	20.0
VIT_15s0046g02190.t01	Wine grape	nucleus	19.35	18.68
VIT_10s0003g05740.t01	Wine grape	nucleus, plastid	17.26	18.59
VIT_02s0025g00420.t01	Wine grape	nucleus	17.56	17.93

Protein Annotations

EntrezGene:100244122	wikigene:100244122	MapMan:15.5.22	Gene3D:2.20.25.80	ProteinID:CCB47042	ProteinID:CCB47042.1
UniProt:F6H4G0	EMBL:FN595233	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	EntrezGene:LOC100244122	wikigene:LOC100244122	PFAM:PF03106
PFAM:PF10533	PFscan:PS50811	PANTHER:PTHR31282	PANTHER:PTHR31282:SF70	SMART:SM00774	SUPFAM:SSF118290
TIGR:TC57228	UniParc:UPI0001983B5A	ArrayExpress:VIT_07s0031g00080	EnsemblPlantsGene:VIT_07s0031g00080	EnsemblPlants:VIT_07s0031g00080.t01	unigene:Vvi.15296
unigene:Vvi.2290	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	RefSeq:XP_002283219	RefSeq:XP_002283219.1	InterPro:Zn-cluster-dom
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7:+:16322554..16324062

Molecular Weight (calculated)

36618.5 Da

IEP (calculated)

10.023

GRAVY (calculated)

-0.624

Length

336 amino acids

Sequence
(BLAST)

001: MAVELMMGYR NDGFADKMEE NAVQEAAAGL ESVEKLIRLL SHGQQQQSQQ QPQQQLGRSS GEMEMDCRAV ADVAVSKFKK VISLLGRTRT GHARFRRAPL
101: SSPPNQSEES QGGGSRVYCP VPIQQVPPVP IQNQHQPHND PPVVFARNGV IDRKDSTTTI NFSYSSAISG ANSFMSSLTG DTDSKQPSSS SAFQITNLSQ
201: VSSVGRPPLS SSSMKRKCSS SDNPGSGKCG GSSGRCHCLK RRKMKLKRVV RVPAISMKMA DIPPDDFSWR KYGQKPIKGS PHPRGYYKCS SVRGCPARKH
301: VERALDDPKM LIVTYEGEHN HSLSVAEAAG LILESS

Best Arabidopsis Sequence Match ( AT4G24240.1 )
(BLAST)

001: MTVELMMSSY SGGGGGGDGF PAIAAAAKME DTALREAASA GIHGVEEFLK LIGQSQQPTE KSQTEITAVT DVAVNSFKKV ISLLGRSRTG HARFRRAPAS
101: TQTPFKQTPV VEEEVEVEEK KPETSSVLTK QKTEQYHGGG SAFRVYCPTP IHRRPPLSHN NNNNQNQTKN GSSSSSPPML ANGAPSTINF APSPPVSATN
201: SFMSSHRCDT DSTHMSSGFE FTNPSQLSGS RGKPPLSSAS LKRRCNSSPS SRCHCSKKRK SRVKRVIRVP AVSSKMADIP SDEFSWRKYG QKPIKGSPHP
301: RGYYKCSSVR GCPARKHVER ALDDAMMLIV TYEGDHNHAL VLETTTMNHD KTL

Arabidopsis Description

WRKY7Probable WRKY transcription factor 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9STX0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.