Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- plasma membrane 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| mitochondrion:
24351685
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400054299 | Potato | cytosol | 83.61 | 90.27 |
| Bra025438.1-P | Field mustard | cytosol | 82.79 | 89.38 |
| PGSC0003DMT400046278 | Potato | cytosol | 55.74 | 88.31 |
| Zm00001d008278_P001 | Maize | cytosol | 85.25 | 81.89 |
| TraesCS1A01G308800.1 | Wheat | cytosol | 85.25 | 79.39 |
| KRH18664 | Soybean | cytosol | 85.25 | 74.29 |
| CDX75970 | Canola | cytosol | 68.85 | 73.68 |
| Zm00001d047597_P001 | Maize | cytosol | 85.25 | 70.75 |
| Bra002368.1-P | Field mustard | cytosol | 85.25 | 69.8 |
| Bra006595.1-P | Field mustard | cytosol | 85.25 | 69.8 |
| Bra020155.1-P | Field mustard | cytosol | 85.25 | 69.8 |
| GSMUA_Achr10P... | Banana | cytosol | 85.25 | 69.8 |
| GSMUA_Achr10P... | Banana | cytosol, plasma membrane | 85.25 | 69.8 |
| GSMUA_Achr2P01120_001 | Banana | cytosol | 85.25 | 69.8 |
| GSMUA_Achr3P09330_001 | Banana | cytosol | 85.25 | 69.8 |
| GSMUA_Achr3P25040_001 | Banana | cytosol | 85.25 | 69.8 |
| GSMUA_Achr5P07820_001 | Banana | cytosol | 85.25 | 69.8 |
| GSMUA_Achr6P15990_001 | Banana | cytosol | 85.25 | 69.8 |
| GSMUA_Achr6P23670_001 | Banana | cytosol | 85.25 | 69.8 |
| GSMUA_Achr9P17280_001 | Banana | cytosol | 85.25 | 69.8 |
| Os01t0267900-01 | Rice | cytosol | 85.25 | 69.8 |
| Os03t0319300-01 | Rice | cytosol, extracellular, nucleus | 85.25 | 69.8 |
| Os07t0687200-02 | Rice | cytosol | 85.25 | 69.8 |
| PGSC0003DMT400018569 | Potato | cytosol | 85.25 | 69.8 |
| PGSC0003DMT400058435 | Potato | cytosol | 85.25 | 69.8 |
| PGSC0003DMT400070437 | Potato | cytosol | 85.25 | 69.8 |
| Solyc12g099990.1.1 | Tomato | nucleus | 85.25 | 69.8 |
| Zm00001d038545_P001 | Maize | cytosol, mitochondrion | 85.25 | 69.8 |
| AT3G56800.1 | Thale cress | cytosol | 84.43 | 69.13 |
| AT5G21274.1 | Thale cress | cytosol | 84.43 | 69.13 |
| Bra000214.1-P | Field mustard | cytosol | 84.43 | 69.13 |
| Bra003251.1-P | Field mustard | cytosol | 84.43 | 69.13 |
| Bra012037.1-P | Field mustard | cytosol | 84.43 | 69.13 |
| Bra014671.1-P | Field mustard | cytosol | 84.43 | 69.13 |
| Bra019453.1-P | Field mustard | cytosol | 84.43 | 69.13 |
| CDY04474 | Canola | cytosol | 84.43 | 69.13 |
| CDY56411 | Canola | cytosol | 84.43 | 69.13 |
| CDY65072 | Canola | cytosol | 84.43 | 69.13 |
| Os01t0279300-01 | Rice | cytosol, plasma membrane, plastid | 84.43 | 69.13 |
| Os05t0491100-01 | Rice | cytosol, extracellular | 84.43 | 69.13 |
| Bra007269.1-P | Field mustard | cytosol | 83.61 | 68.46 |
| CDY55678 | Canola | cytosol | 83.61 | 68.46 |
| VIT_06s0009g01910.t01 | Wine grape | cytosol | 85.25 | 67.97 |
| Bra004166.1-P | Field mustard | cytosol | 82.79 | 67.79 |
| CDX96148 | Canola | cytosol | 82.79 | 67.79 |
| CDX99690 | Canola | cytosol | 82.79 | 67.79 |
| CDY27651 | Canola | cytosol | 82.79 | 67.33 |
| Bra034981.1-P | Field mustard | cytosol | 79.51 | 66.9 |
| CDY12321 | Canola | cytosol | 79.51 | 66.9 |
| PGSC0003DMT400083971 | Potato | extracellular | 80.33 | 65.77 |
| CDX92401 | Canola | cytosol | 72.13 | 65.67 |
| TraesCS3A01G191900.1 | Wheat | cytosol | 84.43 | 64.78 |
| TraesCS3D01G194500.2 | Wheat | cytosol | 84.43 | 64.78 |
| AT1G66410.2 | Thale cress | cytosol | 83.61 | 64.15 |
| AT2G41110.2 | Thale cress | cytosol | 84.43 | 63.98 |
| TraesCS3A01G184500.1 | Wheat | cytosol | 85.25 | 63.41 |
| TraesCS3D01G188600.1 | Wheat | cytosol | 85.25 | 62.28 |
| Zm00001d038543_P004 | Maize | plastid | 85.25 | 61.54 |
| GSMUA_Achr5P27590_001 | Banana | cytosol | 58.2 | 61.21 |
| TraesCS2B01G113800.2 | Wheat | cytosol | 85.25 | 59.43 |
| TraesCS3B01G219900.1 | Wheat | cytosol | 84.43 | 59.2 |
| PGSC0003DMT400097662 | Potato | cytosol, mitochondrion | 83.61 | 58.96 |
| Bra034317.1-P | Field mustard | cytosol | 86.07 | 58.66 |
| CDY48191 | Canola | cytosol | 86.07 | 58.66 |
| CDX77060 | Canola | cytosol | 86.07 | 58.33 |
| AT5G37780.3 | Thale cress | cytosol | 83.61 | 58.29 |
| PGSC0003DMT400042062 | Potato | cytosol | 71.31 | 58.0 |
| AT2G27030.3 | Thale cress | cytosol | 85.25 | 57.46 |
| KRG89812 | Soybean | cytosol, mitochondrion | 75.41 | 55.76 |
| TraesCS3A01G335000.1 | Wheat | cytosol | 82.79 | 55.49 |
| TraesCS3D01G328300.1 | Wheat | cytosol | 82.79 | 55.49 |
| GSMUA_Achr11P... | Banana | cytosol | 45.9 | 54.9 |
| CDY57144 | Canola | cytosol | 65.57 | 54.79 |
| HORVU3Hr1G079210.4 | Barley | cytosol | 81.97 | 54.35 |
| TraesCS3B01G365900.1 | Wheat | cytosol | 80.33 | 53.55 |
| Zm00001d028948_P001 | Maize | cytosol | 85.25 | 52.79 |
| HORVU3Hr1G038010.1 | Barley | cytosol, plastid | 85.25 | 52.26 |
| HORVU2Hr1G016740.4 | Barley | cytosol | 86.89 | 49.3 |
| CDY30947 | Canola | cytosol | 84.43 | 49.28 |
| PGSC0003DMT400034833 | Potato | cytosol | 61.48 | 49.02 |
| AT3G43810.2 | Thale cress | cytosol | 85.25 | 48.6 |
| EES01631 | Sorghum | cytosol | 72.13 | 47.83 |
| Zm00001d052415_P001 | Maize | cytosol | 61.48 | 47.47 |
| Os01t0810300-01 | Rice | plasma membrane | 72.13 | 47.06 |
| CDY21220 | Canola | cytosol | 84.43 | 46.61 |
| Zm00001d043144_P001 | Maize | plasma membrane | 68.03 | 45.36 |
| Os12t0603800-00 | Rice | cytosol | 61.48 | 45.18 |
| TraesCS5A01G057100.1 | Wheat | cytosol | 60.66 | 44.85 |
| TraesCS5D01G068100.1 | Wheat | cytosol | 59.84 | 44.79 |
| HORVU5Hr1G014070.2 | Barley | cytosol | 60.66 | 44.58 |
| Zm00001d041430_P001 | Maize | cytosol | 61.48 | 44.38 |
| EES16322 | Sorghum | cytosol | 63.93 | 44.32 |
| PGSC0003DMT400083727 | Potato | cytosol | 53.28 | 44.22 |
| TraesCS5A01G057200.1 | Wheat | cytosol | 59.02 | 44.17 |
| TraesCS5D01G068000.1 | Wheat | cytosol | 60.66 | 44.05 |
| GSMUA_Achr10P... | Banana | cytosol | 68.03 | 43.92 |
| GSMUA_Achr10P... | Banana | cytosol | 67.21 | 43.62 |
| TraesCS5B01G059900.1 | Wheat | cytosol | 59.84 | 43.45 |
| HORVU5Hr1G044710.4 | Barley | cytosol | 62.3 | 42.22 |
| TraesCS5A01G139700.1 | Wheat | cytosol | 62.3 | 42.22 |
| TraesCS5D01G153400.1 | Wheat | cytosol | 62.3 | 42.22 |
| EES09201 | Sorghum | cytosol | 61.48 | 41.67 |
| TraesCS5B01G137100.1 | Wheat | cytosol | 61.48 | 41.67 |
| Zm00001d005003_P002 | Maize | cytosol | 58.2 | 39.44 |
| AT2G41090.1 | Thale cress | cytosol | 54.92 | 35.08 |
| Zm00001d010649_P001 | Maize | extracellular | 40.16 | 34.51 |
| HORVU5Hr1G014060.1 | Barley | cytosol, plastid | 59.84 | 34.11 |
| HORVU4Hr1G026290.3 | Barley | cytosol, plastid | 61.48 | 33.94 |
| PGSC0003DMT400008152 | Potato | cytosol | 42.62 | 31.9 |
| Os05t0491000-01 | Rice | cytosol | 39.34 | 30.97 |
| PGSC0003DMT400038352 | Potato | cytosol | 40.98 | 30.67 |
| TraesCS1D01G308000.1 | Wheat | cytosol | 37.7 | 30.67 |
| PGSC0003DMT400070433 | Potato | cytosol | 36.89 | 30.61 |
| HORVU0Hr1G001280.1 | Barley | cytosol | 37.7 | 30.46 |
| TraesCS1A01G308700.1 | Wheat | cytosol | 37.7 | 30.26 |
| TraesCS1B01G319300.1 | Wheat | cytosol | 36.89 | 30.0 |
| TraesCS4B01G131100.1 | Wheat | cytosol | 56.56 | 29.87 |
| TraesCS4D01G126100.1 | Wheat | cytosol | 58.2 | 29.46 |
| OQU78227 | Sorghum | cytosol | 40.98 | 27.93 |
| PGSC0003DMT400010295 | Potato | cytosol, mitochondrion | 36.89 | 26.79 |
| PGSC0003DMT400041342 | Potato | cytosol, mitochondrion | 33.61 | 25.47 |
| PGSC0003DMT400063261 | Potato | cytosol | 33.61 | 25.47 |
| PGSC0003DMT400019291 | Potato | cytosol | 18.03 | 18.97 |
| AT2G41100.1 | Thale cress | cytosol | 47.54 | 17.9 |
| GSMUA_Achr8P05790_001 | Banana | cytosol | 33.61 | 16.73 |
Protein Annotations
| Gene3D:1.10.238.10 | EntrezGene:102592805 | MapMan:35.1 | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 | InterPro:IPR002048 | UniProt:M1A3S2 | PFAM:PF13499 |
| PFAM:PF13833 | EnsemblPlantsGene:PGSC0003DMG400005540 | PGSC:PGSC0003DMG400005540 | EnsemblPlants:PGSC0003DMT400014123 | ScanProsite:PS00018 | PFscan:PS50222 |
| PANTHER:PTHR23050 | PANTHER:PTHR23050:SF250 | SMART:SM00054 | SUPFAM:SSF47473 | UniParc:UPI000296CC52 | RefSeq:XP_006349943.1 |
Description
TCH [Source:PGSC_GENE;Acc:PGSC0003DMG400005540]
Coordinates
chr12:-:60551825..60552193
Molecular Weight (calculated)
13702.9 Da
IEP (calculated)
3.983
GRAVY (calculated)
-0.705
Length
122 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSLGQNPTE AELQDMINEV DADGNGTIDF PEFLNLMARK MKDTDSEEEL KEAFRVFDKD QNGFISAAEL RHVMTNLGEK LTDEEVDEMI READVDGDGQ
101: INCHTPNLDA MARVHFPPDT SA
101: INCHTPNLDA MARVHFPPDT SA
001: MADQLTDDQI SEFKEAFSLF DKDGDGCITT KELGTVMRSL GQNPTEAELQ DMINEVDADG NGTIDFPEFL NLMARKMKDT DSEEELKEAF RVFDKDQNGF
101: ISAAELRHVM TNLGEKLTDE EVDEMIKEAD VDGDGQINYE EFVKVMMAK
101: ISAAELRHVM TNLGEKLTDE EVDEMIKEAD VDGDGQINYE EFVKVMMAK
Arabidopsis Description
CAM5Calmodulin 5 [Source:UniProtKB/TrEMBL;Acc:F4IVN6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.