Factsheet for PGSC0003DMT400009314

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400014123
PGSC0003DMT400018569
PGSC0003DMT400034833
PGSC0003DMT400042062
PGSC0003DMT400046278
PGSC0003DMT400054299
PGSC0003DMT400058435
PGSC0003DMT400070437
PGSC0003DMT400097662

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36250.1	PGSC0003DMT400014123	AT2G41090.1	17360592
AT4G36250.1	PGSC0003DMT400018569	AT2G41090.1	17360592
AT4G36250.1	PGSC0003DMT400046278	AT2G41090.1	17360592
AT4G36250.1	PGSC0003DMT400054299	AT2G41090.1	17360592
AT4G36250.1	PGSC0003DMT400058435	AT2G41090.1	17360592
AT4G36250.1	PGSC0003DMT400070437	AT2G41090.1	17360592
AT4G36250.1	PGSC0003DMT400097662	AT2G41090.1	17360592
AT4G36250.1	PGSC0003DMT400014123	AT2G41100.1	17360592
AT4G36250.1	PGSC0003DMT400018569	AT2G41100.1	17360592
AT4G36250.1	PGSC0003DMT400046278	AT2G41100.1	17360592
AT4G36250.1	PGSC0003DMT400054299	AT2G41100.1	17360592
AT4G36250.1	PGSC0003DMT400058435	AT2G41100.1	17360592
AT4G36250.1	PGSC0003DMT400070437	AT2G41100.1	17360592
AT4G36250.1	PGSC0003DMT400097662	AT2G41100.1	17360592
AT4G36250.1	PGSC0003DMT400034833	AT4G14640.1	17360592
AT4G36250.1	PGSC0003DMT400042062	AT4G14640.1	17360592
AT4G36250.1	PGSC0003DMT400014123	AT5G21274.1	17360592
AT4G36250.1	PGSC0003DMT400018569	AT5G21274.1	17360592
AT4G36250.1	PGSC0003DMT400046278	AT5G21274.1	17360592
AT4G36250.1	PGSC0003DMT400054299	AT5G21274.1	17360592
AT4G36250.1	PGSC0003DMT400058435	AT5G21274.1	17360592
AT4G36250.1	PGSC0003DMT400070437	AT5G21274.1	17360592
AT4G36250.1	PGSC0003DMT400097662	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g084640.2.1	Tomato	cytosol	93.46	93.46
VIT_04s0023g02810.t01	Wine grape	cytosol	71.57	70.99
KRH69828	Soybean	cytosol	67.89	68.45
CDX75566	Canola	cytosol	57.06	64.14
CDX72584	Canola	cytosol	62.99	63.64
Bra011674.1-P	Field mustard	cytosol	62.58	63.62
CDY59717	Canola	cytosol	62.78	63.43
Bra017753.1-P	Field mustard	cytosol	62.58	63.22
KRH08130	Soybean	cytosol	68.3	63.02
CDX77447	Canola	cytosol	61.96	62.99
CDY35463	Canola	cytosol	62.78	62.91
AT4G36250.1	Thale cress	cytosol	62.17	62.81
CDX69216	Canola	cytosol	61.55	62.58
CDY24790	Canola	cytosol	62.37	62.5
PGSC0003DMT400051470	Potato	cytosol	36.4	62.46
Bra010553.1-P	Field mustard	cytosol	58.08	60.81
TraesCSU01G066700.2	Wheat	cytosol	57.67	59.24
GSMUA_Achr8P11740_001	Banana	cytosol	57.26	59.2
HORVU6Hr1G061220.6	Barley	cytosol	56.85	57.32
TraesCS2A01G388900.1	Wheat	cytosol	57.67	57.32
TraesCS6A01G239600.1	Wheat	cytosol	56.44	57.26
TraesCS6B01G284600.1	Wheat	cytosol	56.65	57.23
TraesCS6D01G222300.1	Wheat	cytosol	56.65	57.23
TraesCS6D01G222000.1	Wheat	cytosol	56.24	57.05
TraesCS2B01G406900.1	Wheat	cytosol	57.26	56.91
TraesCS6B01G284900.1	Wheat	cytosol	56.24	56.7
Zm00001d017418_P001	Maize	cytosol, mitochondrion	51.53	56.5
TraesCS6A01G240000.1	Wheat	cytosol	52.35	56.39
EES05817	Sorghum	cytosol	55.62	55.97
HORVU2Hr1G092540.1	Barley	extracellular, vacuole	10.02	55.06
OQU82042	Sorghum	cytosol	55.21	54.44
Os04t0540600-01	Rice	cytosol	55.21	54.11
Os02t0646500-01	Rice	plasma membrane	53.37	53.59
TraesCS2D01G386700.1	Wheat	cytosol, plastid	57.46	53.02
Os02t0647900-01	Rice	cytosol	52.97	52.75
Zm00001d025958_P001	Maize	cytosol	53.78	51.77
PGSC0003DMT400045297	Potato	cytosol	48.06	49.58
CDY21568	Canola	cytosol	9.61	48.45
HORVU6Hr1G061270.3	Barley	golgi, mitochondrion, peroxisome	56.85	48.26
CDY20864	Canola	extracellular	11.04	47.37
HORVU2Hr1G092530.1	Barley	peroxisome	43.35	43.27
HORVU4Hr1G041570.1	Barley	plastid	19.43	35.45

Protein Annotations

EntrezGene:102601322	Gene3D:3.40.309.10	Gene3D:3.40.605.10	MapMan:50.1.2	InterPro:Ald_DH/histidinol_DH	InterPro:Ald_DH_C
InterPro:Ald_DH_N	InterPro:Aldehyde_DH_NAD(P)	InterPro:Aldehyde_DH_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0004030
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0006081
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491
GO:GO:0016620	GO:GO:0055114	InterPro:IPR016162	InterPro:IPR016163	UniProt:M0ZW08	PFAM:PF00171
EnsemblPlantsGene:PGSC0003DMG400003619	PGSC:PGSC0003DMG400003619	EnsemblPlants:PGSC0003DMT400009314	PIRSF:PIRSF036492	PANTHER:PTHR43570	PANTHER:PTHR43570:SF17
SUPFAM:SSF53720	TMHMM:TMhelix	UniParc:UPI000296A815	RefSeq:XP_006340688.1	SEG:seg	:

Description

Aldehyde dehydrogenase family 3 member F1 [Source:PGSC_GENE;Acc:PGSC0003DMG400003619]

Coordinates

chr2:+:39881712..39886402

Molecular Weight (calculated)

54394.1 Da

IEP (calculated)

6.721

GRAVY (calculated)

0.006

Length

489 amino acids

Sequence
(BLAST)

001: MNGVEEDVLG ELRTTFRSGR TRSVAWRKAQ LQAILKLLDE NEEEIFEALK QDLGKHPVES YRDEVGVVRK SATNALRCVE KWMAPQKAPI PLVLFPARGA
101: VVSEPLGVVL LFVSWNFPIS LTLDPAIGAI SAGNTIVLKP SELAPKCSSV LANTIPRYLD PEAIKVVEGG QDVSEQLLQL KWDKIFFTGS PRVGRLIMSA
201: AAKHLTPVTL ELGGKCPTIL DTLSSSYDLQ VAVKRIAGGK WGPCNGQACI GIDYVLVETQ FAPVLIELLE KIIKTFYGEN LKTLGNLARI VNKHHFDRVH
301: NLLKDPKVAA SVVYGGSVDE ENMVIEPTIL LNPPLDADIM TEEIFGPLLP IITLNNIEES IQFINSRPKP LAIYAFTKND SLKEKILQET SSGSLTFNDA
401: MIQFICDTLP FGGVGQSGYG RYHGKFSFDT FSHEKAVLHR SLLIELESRY PPWNNFKLEF VRLAYDYDYL GLILLLLGLR GIFRTNRRQ

Best Arabidopsis Sequence Match ( AT4G36250.1 )
(BLAST)

001: MEAMKETVEE SLREMRETFA SGRTRSLKWR KAQIGAIYEM VKDNEDKICN ALFQDLGKHS TEAFRDELGV VLRTATVAIN CLDKWAVPKH SKLPLLFYPA
101: KGKVISEPYG TVLVLSSWNF PISLSLDPLI GAIAAGNTVL LKSSELSPNA SAFLAKTIPA YLDTKAIKVI EGGPDVATIL LQHQWDKIFF TGSPKIGRII
201: MAAAAQHLTP VTLELGGKCP TIVDHHTISK NIKSVVKRIA GGKWGSCNGQ ACISVDYVLI EKSFAPTLID MLKPTIKSFF GENPKESGCL SRIANKHHVQ
301: RLSRLLSDPR VQASIVYGGS IDEDKLYVEP TILLDPPLDS EIMNEEIFGP ILPIITVRDI QESIGIINTK PKPLAIYAFT NDENLKTRIL SETSSGSVTF
401: NDVMIQYMCD ALPFGGVGES GIGRYHGKYS FDCFSHEKAI MEGSLGMDLE ARYPPWNNFK LTFIRLAFRE AYFKLILLML GLKR

Arabidopsis Description

ALDH3F1Aldehyde dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UZB9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.