CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73678
CDX92401
CDX95314
CDY06478
CDY23174

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36250.1	CDX73678	AT3G51920.1	17360592
AT4G36250.1	CDX95314	AT3G51920.1	17360592
AT4G36250.1	CDY23174	AT3G51920.1	17360592
AT4G36250.1	CDY06478	AT4G14640.1	17360592
AT4G36250.1	CDX92401	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21568	Canola	cytosol	68.42	80.41
CDX75566	Canola	cytosol	71.93	18.85
Bra011674.1-P	Field mustard	cytosol	71.93	17.05
CDX77447	Canola	cytosol	71.05	16.84
CDX69216	Canola	cytosol	70.18	16.63
CDY59717	Canola	cytosol	67.54	15.91
CDY35463	Canola	cytosol	67.54	15.78
CDX72584	Canola	cytosol	65.79	15.5
CDY24790	Canola	cytosol	65.79	15.37
AT4G36250.1	Thale cress	cytosol	59.65	14.05
KRH69828	Soybean	cytosol	51.75	12.16
CDY14976	Canola	cytosol	28.95	12.09
VIT_04s0023g02810.t01	Wine grape	cytosol	50.88	11.76
KRH08130	Soybean	cytosol	51.75	11.13
PGSC0003DMT400009314	Potato	cytosol	47.37	11.04
Solyc02g084640.2.1	Tomato	cytosol	46.49	10.84
CDY25655	Canola	cytosol	36.84	10.8
Zm00001d017418_P001	Maize	cytosol, mitochondrion	37.72	9.64
GSMUA_Achr8P11740_001	Banana	cytosol	39.47	9.51
TraesCSU01G066700.2	Wheat	cytosol	38.6	9.24
HORVU6Hr1G061220.6	Barley	cytosol	38.6	9.07
EES05817	Sorghum	cytosol	38.6	9.05
TraesCS6D01G222000.1	Wheat	cytosol	37.72	8.92
TraesCS6D01G222300.1	Wheat	cytosol	37.72	8.88
TraesCS6B01G284600.1	Wheat	cytosol	37.72	8.88
Os02t0646500-01	Rice	plasma membrane	37.72	8.83
CDY36336	Canola	cytosol	35.96	8.51
CDY36018	Canola	cytosol	35.96	8.51
TraesCS6A01G239600.1	Wheat	cytosol	35.96	8.51
TraesCS6B01G284900.1	Wheat	cytosol	35.96	8.45
Os02t0647900-01	Rice	cytosol	35.96	8.35
TraesCS2B01G406900.1	Wheat	cytosol	35.96	8.33
HORVU4Hr1G041570.1	Barley	plastid	19.3	8.21
HORVU2Hr1G092530.1	Barley	peroxisome	35.09	8.16
TraesCS2A01G388900.1	Wheat	cytosol	35.09	8.13
OQU82042	Sorghum	cytosol	35.09	8.06
Os04t0540600-01	Rice	cytosol	35.09	8.02
CDX69039	Canola	mitochondrion	37.72	7.83
TraesCS2D01G386700.1	Wheat	cytosol, plastid	35.96	7.74
HORVU6Hr1G061270.3	Barley	golgi, mitochondrion, peroxisome	38.6	7.64
CDX75414	Canola	mitochondrion, plastid	36.84	7.55
Zm00001d025958_P001	Maize	cytosol	33.33	7.48
TraesCS6A01G240000.1	Wheat	cytosol	28.95	7.27
HORVU2Hr1G092540.1	Barley	extracellular, vacuole	1.75	2.25
CDY66167	Canola	endoplasmic reticulum, mitochondrion, nucleus	2.63	1.88
CDY14975	Canola	cytosol, plastid	0.0	0.0

Protein Annotations

Gene3D:3.40.309.10	MapMan:35.1	GO:A0A078G622	UniProt:A0A078G622	InterPro:Ald_DH/histidinol_DH	InterPro:Ald_DH_C
EnsemblPlants:CDY20864	ProteinID:CDY20864	ProteinID:CDY20864.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0016620	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00013172001	InterPro:IPR016163
PANTHER:PTHR43570	PANTHER:PTHR43570:SF17	SUPFAM:SSF53720	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0004EEBFC0
SEG:seg	:	:	:	:	:

Description

BnaC05g26280DBnaC05g26280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G622]

Coordinates

chrLK032113:+:272308..273451

Molecular Weight (calculated)

12568.7 Da

IEP (calculated)

8.858

GRAVY (calculated)

0.533

Length

114 amino acids

Sequence
(BLAST)

001: MLLLFVILCS LFVVLCSCLL SPESVVKKIS GRKWGFCSGQ ACISVDYALV EQSFTSSLIE TLKPMIRSFF GENPKESGCL SRIVTKKHFQ RLARLLNDPG
101: VQASIVYGGS TIFL

Best Arabidopsis Sequence Match ( AT4G36250.1 )
(BLAST)

001: MEAMKETVEE SLREMRETFA SGRTRSLKWR KAQIGAIYEM VKDNEDKICN ALFQDLGKHS TEAFRDELGV VLRTATVAIN CLDKWAVPKH SKLPLLFYPA
101: KGKVISEPYG TVLVLSSWNF PISLSLDPLI GAIAAGNTVL LKSSELSPNA SAFLAKTIPA YLDTKAIKVI EGGPDVATIL LQHQWDKIFF TGSPKIGRII
201: MAAAAQHLTP VTLELGGKCP TIVDHHTISK NIKSVVKRIA GGKWGSCNGQ ACISVDYVLI EKSFAPTLID MLKPTIKSFF GENPKESGCL SRIANKHHVQ
301: RLSRLLSDPR VQASIVYGGS IDEDKLYVEP TILLDPPLDS EIMNEEIFGP ILPIITVRDI QESIGIINTK PKPLAIYAFT NDENLKTRIL SETSSGSVTF
401: NDVMIQYMCD ALPFGGVGES GIGRYHGKYS FDCFSHEKAI MEGSLGMDLE ARYPPWNNFK LTFIRLAFRE AYFKLILLML GLKR

Arabidopsis Description

ALDH3F1Aldehyde dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UZB9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.