Factsheet for PGSC0003DMT400051470

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g013900.2.1	Tomato	cytosol	27.02	95.06
Solyc01g012760.1.1	Tomato	cytosol	65.61	90.34
Solyc01g012700.2.1	Tomato	cytosol	78.6	88.54
Solyc01g013890.1.1	Tomato	nucleus	58.25	59.93
Solyc01g011510.2.1	Tomato	cytosol	95.79	54.6
KRH10203	Soybean	cytosol	70.18	40.49
VIT_06s0004g02060.t01	Wine grape	cytosol	68.07	40.0
KRH23132	Soybean	cytosol	69.12	39.88
KRH24704	Soybean	cytosol	65.61	37.85
KRH29710	Soybean	cytosol	65.61	37.85
PGSC0003DMT400009314	Potato	cytosol	62.46	36.4
GSMUA_Achr6P17710_001	Banana	cytosol	17.19	34.03
PGSC0003DMT400045297	Potato	cytosol	51.93	31.22
Solyc01g012750.1.1	Tomato	extracellular	0.7	1.89
HORVU6Hr1G001270.1	Barley	cytosol, peroxisome, plastid	0.0	0.0

Protein Annotations

Gene3D:3.40.309.10	Gene3D:3.40.605.10	MapMan:35.1	InterPro:Ald_DH/histidinol_DH	InterPro:Ald_DH_C	InterPro:Ald_DH_N
InterPro:Aldehyde_DH_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0016620	GO:GO:0055114	InterPro:IPR016162	InterPro:IPR016163	UniProt:M1BRT1	PFAM:PF00171
EnsemblPlantsGene:PGSC0003DMG400019991	PGSC:PGSC0003DMG400019991	EnsemblPlants:PGSC0003DMT400051470	PANTHER:PTHR43570	PANTHER:PTHR43570:SF13	SUPFAM:SSF53720
UniParc:UPI000295093A	:	:	:	:	:

Description

Aldehyde dehydrogenase family 3 member F1 [Source:PGSC_GENE;Acc:PGSC0003DMG400019991]

Coordinates

chr1:-:49970671..49977513

Molecular Weight (calculated)

31891.9 Da

IEP (calculated)

9.218

GRAVY (calculated)

-0.019

Length

285 amino acids

Sequence
(BLAST)

001: MGAAAKHLTP VTLELGGKCP VIIDSLSSSW DKKIAIKRIL SGKFGSCAGQ ACIGIDYILV DKTFVNELVK LIKLGIPKMF GENPKESHSI SRIVNRNHFL
101: RLKNLLDEPM VKKSVIYGGS SDEDNLYIEP TVLLDPPMQS TIMTEEIFGP LLPIITLDKI EDSIEFINAR PKPLTIYAFT KNEEFKRKIT KGTSSGSLVF
201: NDTIIQYAAD TLPFGGVGQS GFGRYHGKFS FDTFSHEKAI ARRSFLTDIW FRYPPWSDHT LQLFKSAFIY DYLSIVLITL GLKKA

Best Arabidopsis Sequence Match ( AT4G36250.1 )
(BLAST)

001: MEAMKETVEE SLREMRETFA SGRTRSLKWR KAQIGAIYEM VKDNEDKICN ALFQDLGKHS TEAFRDELGV VLRTATVAIN CLDKWAVPKH SKLPLLFYPA
101: KGKVISEPYG TVLVLSSWNF PISLSLDPLI GAIAAGNTVL LKSSELSPNA SAFLAKTIPA YLDTKAIKVI EGGPDVATIL LQHQWDKIFF TGSPKIGRII
201: MAAAAQHLTP VTLELGGKCP TIVDHHTISK NIKSVVKRIA GGKWGSCNGQ ACISVDYVLI EKSFAPTLID MLKPTIKSFF GENPKESGCL SRIANKHHVQ
301: RLSRLLSDPR VQASIVYGGS IDEDKLYVEP TILLDPPLDS EIMNEEIFGP ILPIITVRDI QESIGIINTK PKPLAIYAFT NDENLKTRIL SETSSGSVTF
401: NDVMIQYMCD ALPFGGVGES GIGRYHGKYS FDCFSHEKAI MEGSLGMDLE ARYPPWNNFK LTFIRLAFRE AYFKLILLML GLKR

Arabidopsis Description

ALDH3F1Aldehyde dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UZB9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.