Factsheet for Solyc01g013890.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 4
plastid 1
extracellular 2
endoplasmic reticulum 3
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g012750.1.1	Tomato	extracellular	27.8	72.64
PGSC0003DMT400051470	Potato	cytosol	59.93	58.25
Solyc01g012700.2.1	Tomato	cytosol	47.65	52.17
Solyc01g011510.2.1	Tomato	cytosol	89.17	49.4
Solyc01g012760.1.1	Tomato	cytosol	35.02	46.86
VIT_06s0004g02060.t01	Wine grape	cytosol	61.73	35.26
KRH10203	Soybean	cytosol	62.09	34.82
KRH23132	Soybean	cytosol	61.37	34.41
KRH24704	Soybean	cytosol	56.32	31.58
KRH29710	Soybean	cytosol	55.96	31.38
Solyc02g084640.2.1	Tomato	cytosol	55.23	31.29
Solyc06g060250.2.1	Tomato	cytosol, nucleus, unclear	49.1	28.69
GSMUA_Achr6P17710_001	Banana	cytosol	12.27	23.61
HORVU6Hr1G001270.1	Barley	cytosol, peroxisome, plastid	0.36	0.98
Solyc01g013900.2.1	Tomato	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.40.309.10	Gene3D:3.40.605.10	MapMan:35.1	InterPro:Ald_DH/histidinol_DH	InterPro:Ald_DH_C	InterPro:Ald_DH_N
InterPro:Aldehyde_DH_dom	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0016620	GO:GO:0055114	InterPro:IPR016162	InterPro:IPR016163	UniProt:K4AU26
PFAM:PF00171	PANTHER:PTHR43570	PANTHER:PTHR43570:SF13	SUPFAM:SSF53720	EnsemblPlantsGene:Solyc01g013890.1	EnsemblPlants:Solyc01g013890.1.1
UniParc:UPI00027620FB	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:10337246..10342369

Molecular Weight (calculated)

30504.5 Da

IEP (calculated)

7.947

GRAVY (calculated)

0.162

Length

277 amino acids

Sequence
(BLAST)

001: MFVHFSIEHI GLSLEPLIGA IAYENVALLK PSDQAPASSS VLAKIIPNYL DNKAIKVIEG DYTVGDKLLQ QKWDKIFFTG SPKVAQIVMG AAAKHLNPVT
101: LELGGKCPAI IDSLSSSWDK KIAMRRILSG KFGSCAGQAC SGIDYILVDN IFVNELVKLI KLGIPKMLGE NPKESHSISR IVIKNQFLRL KNLLDEYIEP
201: TVLLYPPVQS TIMIDEIFGP LSPIITLDKI EDNIEFINAR PKPLTIYAFT KNEEFKGKIT KGTCSGSLVF SDTIIQL

Best Arabidopsis Sequence Match ( AT4G36250.1 )
(BLAST)

001: MEAMKETVEE SLREMRETFA SGRTRSLKWR KAQIGAIYEM VKDNEDKICN ALFQDLGKHS TEAFRDELGV VLRTATVAIN CLDKWAVPKH SKLPLLFYPA
101: KGKVISEPYG TVLVLSSWNF PISLSLDPLI GAIAAGNTVL LKSSELSPNA SAFLAKTIPA YLDTKAIKVI EGGPDVATIL LQHQWDKIFF TGSPKIGRII
201: MAAAAQHLTP VTLELGGKCP TIVDHHTISK NIKSVVKRIA GGKWGSCNGQ ACISVDYVLI EKSFAPTLID MLKPTIKSFF GENPKESGCL SRIANKHHVQ
301: RLSRLLSDPR VQASIVYGGS IDEDKLYVEP TILLDPPLDS EIMNEEIFGP ILPIITVRDI QESIGIINTK PKPLAIYAFT NDENLKTRIL SETSSGSVTF
401: NDVMIQYMCD ALPFGGVGES GIGRYHGKYS FDCFSHEKAI MEGSLGMDLE ARYPPWNNFK LTFIRLAFRE AYFKLILLML GLKR

Arabidopsis Description

ALDH3F1Aldehyde dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UZB9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.