Factsheet for Solyc06g060250.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, nucleus, cytosol

Predictor Summary:

cytosol 4
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400045297	Potato	cytosol	97.68	97.68
KRH53251	Soybean	cytosol	73.42	70.88
KRH17967	Soybean	endoplasmic reticulum	73.0	69.76
KRH16375	Soybean	endoplasmic reticulum, extracellular	73.0	69.76
KRH64661	Soybean	cytosol	70.89	68.85
AT1G44170.2	Thale cress	cytosol	69.2	67.77
GSMUA_Achr10P...	Banana	cytosol	68.57	67.15
CDY36018	Canola	cytosol	68.14	67.01
CDY36336	Canola	cytosol	68.14	67.01
Bra014022.1-P	Field mustard	cytosol	67.93	66.81
GSMUA_Achr8P30130_001	Banana	mitochondrion, plastid	66.46	66.18
Bra032205.1-P	Field mustard	cytosol	67.09	65.98
Os12t0178000-01	Rice	endoplasmic reticulum	51.05	65.94
GSMUA_Achr11P...	Banana	cytosol	68.14	65.52
KXG27931	Sorghum	cytosol	65.82	65.27
Zm00001d000116_P001	Maize	cytosol	65.82	65.27
Os11t0186200-01	Rice	cytosol, nucleus, plasma membrane, plastid	66.03	64.94
GSMUA_Achr6P17700_001	Banana	cytosol	66.03	64.27
TraesCS4B01G098300.1	Wheat	cytosol, golgi	64.98	64.03
Zm00001d004731_P001	Maize	cytosol	65.82	63.93
TraesCS4D01G094500.1	Wheat	cytosol, golgi	63.92	62.99
TraesCS4A01G219900.1	Wheat	cytosol, golgi, unclear	63.92	62.99
CDY25655	Canola	cytosol	51.48	62.72
TraesCS5A01G113200.1	Wheat	cytosol	63.5	62.71
HORVU4Hr1G017450.1	Barley	cytosol	64.35	62.37
TraesCS5B01G120100.1	Wheat	cytosol	63.08	62.29
TraesCS5D01G127300.2	Wheat	cytosol	62.87	62.21
CDY14976	Canola	cytosol	35.23	61.17
VIT_18s0001g02440.t01	Wine grape	endoplasmic reticulum, golgi	70.25	60.55
EES15756	Sorghum	cytosol	60.55	58.93
Bra036943.1-P	Field mustard	cytosol	35.02	58.25
CDY66167	Canola	endoplasmic reticulum, mitochondrion, nucleus	19.62	58.12
HORVU5Hr1G037200.7	Barley	mitochondrion	58.23	56.91
Zm00001d023580_P001	Maize	cytosol	58.65	56.62
CDY14975	Canola	cytosol, plastid	10.55	51.02
Solyc01g013890.1.1	Tomato	nucleus	28.69	49.1
Solyc01g011510.2.1	Tomato	cytosol	51.48	48.8
Solyc01g012760.1.1	Tomato	cytosol	20.89	47.83
Solyc02g084640.2.1	Tomato	cytosol	48.73	47.24
Solyc01g013900.2.1	Tomato	cytosol	7.59	44.44
Solyc01g012700.2.1	Tomato	cytosol	23.21	43.48
Solyc01g012750.1.1	Tomato	extracellular	9.7	43.4

Protein Annotations

Gene3D:3.40.309.10	Gene3D:3.40.605.10	MapMan:50.1.2	InterPro:Ald_DH/histidinol_DH	InterPro:Ald_DH_C	InterPro:Ald_DH_CS_GLU
InterPro:Ald_DH_N	InterPro:Aldehyde_DH_NAD(P)	InterPro:Aldehyde_DH_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0004029
GO:GO:0004030	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773
GO:GO:0005783	GO:GO:0005794	GO:GO:0006081	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009269	GO:GO:0009506	GO:GO:0009628	GO:GO:0009651	GO:GO:0009719	GO:GO:0009737
GO:GO:0009987	GO:GO:0016020	GO:GO:0016491	GO:GO:0016620	GO:GO:0055114	InterPro:IPR016162
InterPro:IPR016163	UniProt:K4C6K6	PFAM:PF00171	PIRSF:PIRSF036492	ScanProsite:PS00687	PANTHER:PTHR43570
PANTHER:PTHR43570:SF10	SUPFAM:SSF53720	EnsemblPlantsGene:Solyc06g060250.2	EnsemblPlants:Solyc06g060250.2.1	UniParc:UPI000276614E	SEG:seg

Description

Aldehyde dehydrogenase family 3 member H1 [Source:Projected from Arabidopsis thaliana (AT1G44170) UniProtKB/Swiss-Prot;Acc:Q70DU8]

Coordinates

chr6:-:38203665..38211918

Molecular Weight (calculated)

51909.4 Da

IEP (calculated)

8.945

GRAVY (calculated)

0.013

Length

474 amino acids

Sequence
(BLAST)

001: MDAEAIVKEL RGTYGSGKTK SYEWRVSQLK ALLKIAENHE KEITDALYSD LSKPELEAFI HEVSMMKTAC KLALKELKWW MKPEKVKTSL TSFPSSAEIV
101: PEPLGVVLVI SAWNYPFLLS LDPVIGAIAA GNAVVLKPSE IAPATSSVLA KLLGQYMDVS AIRVVEGAVP ETTALLEQKW DKIFYTGNGK VGRIVLAAAA
201: KHLTPVVLEL GGKSPVVVDS NIDYKIAVRR IIAGKWGCNN GQACISPDYI ITTKESVPKL LDAMKQELEK FYGKDPLKSG DLSRIVNANH FQRLSKLLDD
301: NKVVDKVVHG GQRDENNLKI SPTILLDVPE DSLIMKEEIF GPLLPIITVN KVEDSIQFIK AREKPLAAYL FTSNKKLEEE FVMNISAGGL LINDTTLQVA
401: LSTLPFGGVG ESGMGSCHGK FSFDTFSHKK AVLRRSFAGD VPARYPPYTA GKARFLKALL NGDIIGLIRA LIGW

Best Arabidopsis Sequence Match ( AT1G44170.2 )
(BLAST)

001: MAAKKVFGSA EASNLVTELR RSFDDGVTRG YEWRVTQLKK LMIICDNHEP EIVAALRDDL GKPELESSVY EVSLLRNSIK LALKQLKNWM APEKAKTSLT
101: TFPASAEIVS EPLGVVLVIS AWNYPFLLSI DPVIGAISAG NAVVLKPSEL APASSALLTK LLEQYLDPSA VRVVEGAVTE TSALLEQKWD KIFYTGSSKI
201: GRVIMAAAAK HLTPVVLELG GKSPVVVDSD TDLKVTVRRI IVGKWGCNNG QACVSPDYIL TTKEYAPKLI DAMKLELEKF YGKNPIESKD MSRIVNSNHF
301: DRLSKLLDEK EVSDKIVYGG EKDRENLKIA PTILLDVPLD SLIMSEEIFG PLLPILTLNN LEESFDVIRS RPKPLAAYLF THNKKLKERF AATVSAGGIV
401: VNDIAVHLAL HTLPFGGVGE SGMGAYHGKF SFDAFSHKKA VLYRSLFGDS AVRYPPYSRG KLRLLKALVD SNIFDLFKVL LGLA

Arabidopsis Description

ALDH3H1Aldehyde dehydrogenase family 3 member H1 [Source:UniProtKB/Swiss-Prot;Acc:Q70DU8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.