CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 4
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16375	Soybean	endoplasmic reticulum, extracellular	93.95	93.95
KRH53251	Soybean	cytosol	77.22	78.0
KRH64661	Soybean	cytosol	76.61	77.87
Solyc06g060250.2.1	Tomato	cytosol, nucleus, unclear	69.76	73.0
PGSC0003DMT400045297	Potato	cytosol	69.76	73.0
AT1G44170.2	Thale cress	cytosol	68.55	70.25
Bra032205.1-P	Field mustard	cytosol	66.33	68.26
CDY36018	Canola	cytosol	66.33	68.26
Bra014022.1-P	Field mustard	cytosol	66.13	68.05
CDY36336	Canola	cytosol	66.13	68.05
Os12t0178000-01	Rice	endoplasmic reticulum	49.6	67.03
GSMUA_Achr10P...	Banana	cytosol	65.32	66.94
GSMUA_Achr8P30130_001	Banana	mitochondrion, plastid	62.9	65.55
GSMUA_Achr11P...	Banana	cytosol	64.72	65.11
Zm00001d000116_P001	Maize	cytosol	62.1	64.44
GSMUA_Achr6P17700_001	Banana	cytosol	63.1	64.27
KXG27931	Sorghum	cytosol	61.9	64.23
VIT_18s0001g02440.t01	Wine grape	endoplasmic reticulum, golgi	70.56	63.64
Os11t0186200-01	Rice	cytosol, nucleus, plasma membrane, plastid	61.29	63.07
Zm00001d004731_P001	Maize	cytosol	61.9	62.91
CDY25655	Canola	cytosol	49.19	62.72
CDY14976	Canola	cytosol	34.27	62.27
TraesCS4B01G098300.1	Wheat	cytosol, golgi	60.28	62.16
CDY66167	Canola	endoplasmic reticulum, mitochondrion, nucleus	19.96	61.88
TraesCS4D01G094500.1	Wheat	cytosol, golgi	59.68	61.54
TraesCS4A01G219900.1	Wheat	cytosol, golgi, unclear	59.68	61.54
TraesCS5B01G120100.1	Wheat	cytosol	59.48	61.46
TraesCS5D01G127300.2	Wheat	cytosol	59.27	61.38
HORVU4Hr1G017450.1	Barley	cytosol	60.08	60.94
TraesCS5A01G113200.1	Wheat	cytosol	58.87	60.83
EES15756	Sorghum	cytosol	59.48	60.57
Zm00001d023580_P001	Maize	cytosol	59.48	60.08
KRH40972	Soybean	plastid	64.11	58.78
Bra036943.1-P	Field mustard	cytosol	33.47	58.25
HORVU5Hr1G037200.7	Barley	mitochondrion	56.25	57.53
CDY14975	Canola	cytosol, plastid	9.68	48.98
KRH24704	Soybean	cytosol	48.39	48.58
KRH23132	Soybean	cytosol	48.39	48.58
KRH29710	Soybean	cytosol	47.38	47.57
KRH10203	Soybean	cytosol	47.38	47.57
KRH69828	Soybean	cytosol	46.17	47.22
KRH08130	Soybean	cytosol	46.57	43.58

Protein Annotations

EntrezGene:100816594	Gene3D:3.40.309.10	Gene3D:3.40.605.10	MapMan:50.1.2	EMBL:ACUP02008019	InterPro:Ald_DH/histidinol_DH
InterPro:Ald_DH_C	InterPro:Ald_DH_CS_GLU	InterPro:Ald_DH_N	InterPro:Aldehyde_DH_NAD(P)	InterPro:Aldehyde_DH_dom	ncoils:Coil
EnsemblPlantsGene:GLYMA_13G030400	GO:GO:0003674	GO:GO:0003824	GO:GO:0004030	GO:GO:0006081	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016620	GO:GO:0055114	UniProt:I1JFT5
InterPro:IPR016162	InterPro:IPR016163	EnsemblPlants:KRH17967	ProteinID:KRH17967	ProteinID:KRH17967.1	PFAM:PF00171
PIRSF:PIRSF036492	ScanProsite:PS00687	PANTHER:PTHR43570	PANTHER:PTHR43570:SF10	SUPFAM:SSF53720	UniParc:UPI0002337280
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:10019610..10026287

Molecular Weight (calculated)

54247.8 Da

IEP (calculated)

9.556

GRAVY (calculated)

-0.035

Length

496 amino acids

Sequence
(BLAST)

001: MSSTPQDSVK TTASAKNTAF DAEAASRLVN ELRRNFASNK TRSYEWRLSQ LNALEKLVVV HEQEIVDALR NDLGKPPLET VAYEIAMLKN SCRIALKELK
101: HWMTPEKVKT SIATFPSSAE IVSEPLGVVL VISAWNYPFL LSLDPVVGAI AAGNAVVLKP SEIAPATSSL LAKLIGDYLD NSCIRVVEGA VDETSALLQQ
201: KWDKIFYTGN GRVARIVMAA ASKHLTPVVL ELGGKSPVVV DSNINLKVAT RRIIAGKWGS NNGQACISPD YIITTKDYAP KLVDALKTEL EKFYGKNPLE
301: SKDLSRVVNS NHFNRLTKLL DDDKVSGKIV YGGQKDENKL KISPTVLLDV PRDSLIMNEE IFGPLLPILT VDKLEESFDV INSGPKPLAA YIFTNNKKLK
401: EQFVMTISAG GLVVNDTTLH LAVHTLPFGG VGESGVGAYH GKFSFEAFSH KKAVLYRKFI GDAPVRYPPY TNTKMRLLKA IIGGGIHGIV RALFGW

Best Arabidopsis Sequence Match ( AT1G44170.2 )
(BLAST)

001: MAAKKVFGSA EASNLVTELR RSFDDGVTRG YEWRVTQLKK LMIICDNHEP EIVAALRDDL GKPELESSVY EVSLLRNSIK LALKQLKNWM APEKAKTSLT
101: TFPASAEIVS EPLGVVLVIS AWNYPFLLSI DPVIGAISAG NAVVLKPSEL APASSALLTK LLEQYLDPSA VRVVEGAVTE TSALLEQKWD KIFYTGSSKI
201: GRVIMAAAAK HLTPVVLELG GKSPVVVDSD TDLKVTVRRI IVGKWGCNNG QACVSPDYIL TTKEYAPKLI DAMKLELEKF YGKNPIESKD MSRIVNSNHF
301: DRLSKLLDEK EVSDKIVYGG EKDRENLKIA PTILLDVPLD SLIMSEEIFG PLLPILTLNN LEESFDVIRS RPKPLAAYLF THNKKLKERF AATVSAGGIV
401: VNDIAVHLAL HTLPFGGVGE SGMGAYHGKF SFDAFSHKKA VLYRSLFGDS AVRYPPYSRG KLRLLKALVD SNIFDLFKVL LGLA

Arabidopsis Description

ALDH3H1Aldehyde dehydrogenase family 3 member H1 [Source:UniProtKB/Swiss-Prot;Acc:Q70DU8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.