CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

cytosol 4
plastid 5

Predictors

GFP

MS/MS

Papers

extracellular: 25724908
endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 25724908 doi

VC Clarke, PC Loughlin, A Gavrin, C Chen, EM Brear, DA Day, PM Smith

From the ‡University of Sydney, School of Biological Sciences, Sydney Australia;, From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; penny.smith@sydney.edu.au., From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; §Flinders University, School of Biological Sciences, Adelaide Australia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH17967	Soybean	endoplasmic reticulum	93.95	93.95
KRH53251	Soybean	cytosol	77.02	77.8
KRH64661	Soybean	cytosol	76.21	77.46
PGSC0003DMT400045297	Potato	cytosol	70.16	73.42
Solyc06g060250.2.1	Tomato	cytosol, nucleus, unclear	69.76	73.0
AT1G44170.2	Thale cress	cytosol	68.35	70.04
Os12t0178000-01	Rice	endoplasmic reticulum	50.6	68.39
Bra032205.1-P	Field mustard	cytosol	66.13	68.05
CDY36018	Canola	cytosol	65.93	67.84
Bra014022.1-P	Field mustard	cytosol	65.73	67.63
CDY36336	Canola	cytosol	65.73	67.63
GSMUA_Achr10P...	Banana	cytosol	65.93	67.56
GSMUA_Achr8P30130_001	Banana	mitochondrion, plastid	63.71	66.39
GSMUA_Achr11P...	Banana	cytosol	65.73	66.13
KXG27931	Sorghum	cytosol	63.1	65.48
Zm00001d000116_P001	Maize	cytosol	63.1	65.48
Os11t0186200-01	Rice	cytosol, nucleus, plasma membrane, plastid	62.7	64.52
GSMUA_Achr6P17700_001	Banana	cytosol	63.31	64.48
Zm00001d004731_P001	Maize	cytosol	63.1	64.14
VIT_18s0001g02440.t01	Wine grape	endoplasmic reticulum, golgi	70.97	64.0
CDY25655	Canola	cytosol	49.8	63.5
TraesCS4B01G098300.1	Wheat	cytosol, golgi	61.49	63.41
TraesCS4D01G094500.1	Wheat	cytosol, golgi	60.89	62.79
TraesCS4A01G219900.1	Wheat	cytosol, golgi, unclear	60.89	62.79
CDY14976	Canola	cytosol	34.48	62.64
HORVU4Hr1G017450.1	Barley	cytosol	61.09	61.96
TraesCS5B01G120100.1	Wheat	cytosol	59.88	61.88
TraesCS5D01G127300.2	Wheat	cytosol	59.68	61.8
TraesCS5A01G113200.1	Wheat	cytosol	59.48	61.46
EES15756	Sorghum	cytosol	59.48	60.57
CDY66167	Canola	endoplasmic reticulum, mitochondrion, nucleus	19.35	60.0
Zm00001d023580_P001	Maize	cytosol	58.27	58.86
Bra036943.1-P	Field mustard	cytosol	33.67	58.6
KRH40972	Soybean	plastid	63.91	58.6
HORVU5Hr1G037200.7	Barley	mitochondrion	56.85	58.14
KRH24704	Soybean	cytosol	48.79	48.99
CDY14975	Canola	cytosol, plastid	9.68	48.98
KRH23132	Soybean	cytosol	48.19	48.38
KRH29710	Soybean	cytosol	47.58	47.77
KRH10203	Soybean	cytosol	47.58	47.77
KRH69828	Soybean	cytosol	46.17	47.22
KRH08130	Soybean	cytosol	46.77	43.77

Protein Annotations

EntrezGene:100778722	Gene3D:3.40.309.10	Gene3D:3.40.605.10	MapMan:50.1.2	EMBL:ACUP02008877	InterPro:Ald_DH/histidinol_DH
InterPro:Ald_DH_C	InterPro:Ald_DH_CS_GLU	InterPro:Ald_DH_N	InterPro:Aldehyde_DH_NAD(P)	InterPro:Aldehyde_DH_dom	EnsemblPlantsGene:GLYMA_14G152100
GO:GO:0003674	GO:GO:0003824	GO:GO:0004030	GO:GO:0006081	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0016620	GO:GO:0055114	UniProt:I1MA57	InterPro:IPR016162
InterPro:IPR016163	EnsemblPlants:KRH16375	ProteinID:KRH16375	ProteinID:KRH16375.1	PFAM:PF00171	PIRSF:PIRSF036492
ScanProsite:PS00687	PANTHER:PTHR43570	PANTHER:PTHR43570:SF10	SUPFAM:SSF53720	UniParc:UPI000233C0E7	SEG:seg

Description

hypothetical protein

Coordinates

chr14:+:32978400..32985147

Molecular Weight (calculated)

54050.6 Da

IEP (calculated)

9.456

GRAVY (calculated)

0.011

Length

496 amino acids

Sequence
(BLAST)

001: MSSSTPDSDK TTTSSKKSAF DALAASRLVT ELRGNFASGK TRSYEWRLLQ LNAIAKLVVD HEQEIVDALR NDLGKPPLET VAYEIAMLKN SCRIALKELK
101: HWMTPEKVKT SIATFPSSAE IVSEPLGVVL VISAWNYPFL LSLDPVIGAI AAGNAVVLKP SEIAPATSSL LAKLLGDYLD NSCIKVVEGA VDETSALLQQ
201: KWDKIFYTGN GRVARIVMAA ASKHLTPVVL ELGGKSPVVV DSNINLKVAT RRIIAGKWGS NNGQACISPD YIITTKDYAP KLVDALKTEL EKFYGKNPLE
301: SKDLSRIVNS NHFNRLTKLL DDDKVSGKIV YGGEKDESKL KISPTVLLDV PRDSLIMNEE IFGPLLPILT VDKIEESFDV INSGSKPLAA YIFTNTKKLK
401: EQFVMTISAG GLVVNDTTLH LAVHTLPFGG VGESGVGAYH GKFTFEAFSH KKAVLYRRFI GDAPVRYPPY TNTKMRLLKA LIGGGILGII RALFGW

Best Arabidopsis Sequence Match ( AT1G44170.2 )
(BLAST)

001: MAAKKVFGSA EASNLVTELR RSFDDGVTRG YEWRVTQLKK LMIICDNHEP EIVAALRDDL GKPELESSVY EVSLLRNSIK LALKQLKNWM APEKAKTSLT
101: TFPASAEIVS EPLGVVLVIS AWNYPFLLSI DPVIGAISAG NAVVLKPSEL APASSALLTK LLEQYLDPSA VRVVEGAVTE TSALLEQKWD KIFYTGSSKI
201: GRVIMAAAAK HLTPVVLELG GKSPVVVDSD TDLKVTVRRI IVGKWGCNNG QACVSPDYIL TTKEYAPKLI DAMKLELEKF YGKNPIESKD MSRIVNSNHF
301: DRLSKLLDEK EVSDKIVYGG EKDRENLKIA PTILLDVPLD SLIMSEEIFG PLLPILTLNN LEESFDVIRS RPKPLAAYLF THNKKLKERF AATVSAGGIV
401: VNDIAVHLAL HTLPFGGVGE SGMGAYHGKF SFDAFSHKKA VLYRSLFGDS AVRYPPYSRG KLRLLKALVD SNIFDLFKVL LGLA

Arabidopsis Description

ALDH3H1Aldehyde dehydrogenase family 3 member H1 [Source:UniProtKB/Swiss-Prot;Acc:Q70DU8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.