Factsheet for PGSC0003DMT400058291

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
extracellular 4
endoplasmic reticulum 4
vacuole 5
plasma membrane 7
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400014123
PGSC0003DMT400018569
PGSC0003DMT400046278
PGSC0003DMT400054299
PGSC0003DMT400058435
PGSC0003DMT400070437
PGSC0003DMT400097662

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27190.1	PGSC0003DMT400014123	AT2G41090.1	17360592
AT1G27190.1	PGSC0003DMT400018569	AT2G41090.1	17360592
AT1G27190.1	PGSC0003DMT400046278	AT2G41090.1	17360592
AT1G27190.1	PGSC0003DMT400054299	AT2G41090.1	17360592
AT1G27190.1	PGSC0003DMT400058435	AT2G41090.1	17360592
AT1G27190.1	PGSC0003DMT400070437	AT2G41090.1	17360592
AT1G27190.1	PGSC0003DMT400097662	AT2G41090.1	17360592
AT1G27190.1	PGSC0003DMT400014123	AT5G21274.1	17360592
AT1G27190.1	PGSC0003DMT400018569	AT5G21274.1	17360592
AT1G27190.1	PGSC0003DMT400046278	AT5G21274.1	17360592
AT1G27190.1	PGSC0003DMT400054299	AT5G21274.1	17360592
AT1G27190.1	PGSC0003DMT400058435	AT5G21274.1	17360592
AT1G27190.1	PGSC0003DMT400070437	AT5G21274.1	17360592
AT1G27190.1	PGSC0003DMT400097662	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g006570.1.1	Tomato	plasma membrane	94.8	95.57
VIT_01s0026g01060.t01	Wine grape	plasma membrane	64.55	64.98
AT1G27190.1	Thale cress	plasma membrane	61.14	62.56
Bra024650.1-P	Field mustard	plasma membrane	60.81	62.54
CDY16228	Canola	plasma membrane	60.81	62.44
AT1G69990.1	Thale cress	plasma membrane	59.67	62.1
CDY14686	Canola	plasma membrane	60.16	61.98
CDY38780	Canola	plasma membrane	58.05	59.5
Bra016244.1-P	Field mustard	plasma membrane	57.56	59.4
CDY11627	Canola	plasma membrane	57.07	58.99
PGSC0003DMT400003278	Potato	plasma membrane	57.4	58.74
PGSC0003DMT400017876	Potato	plasma membrane	58.21	58.5
PGSC0003DMT400085762	Potato	extracellular	18.37	53.81
Zm00001d016331_P001	Maize	vacuole	16.1	44.2
PGSC0003DMT400071183	Potato	plasma membrane	42.28	42.41
PGSC0003DMT400070657	Potato	peroxisome, plasma membrane, plastid	24.55	37.66
PGSC0003DMT400075495	Potato	plasma membrane	35.94	37.59
PGSC0003DMT400070664	Potato	cytosol, plasma membrane, plastid	21.46	35.77
PGSC0003DMT400075494	Potato	plasma membrane	33.82	35.74
PGSC0003DMT400070667	Potato	cytosol	12.52	34.84
Zm00001d021202_P030	Maize	plastid	25.2	33.99
PGSC0003DMT400093490	Potato	extracellular	14.63	33.71
PGSC0003DMT400070666	Potato	plastid	24.88	32.83
Zm00001d006033_P032	Maize	plastid	31.06	30.41
PGSC0003DMT400070694	Potato	cytosol	10.41	30.19

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:102585976	MapMan:18.4.1.10.1	Gene3D:3.30.200.20	Gene3D:3.80.10.10	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	InterPro:IPR032675
InterPro:Kinase-like_dom_sf	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf	UniProt:M1C2F5	PFAM:PF07714	PFAM:PF08263
EnsemblPlantsGene:PGSC0003DMG400022632	PGSC:PGSC0003DMG400022632	EnsemblPlants:PGSC0003DMT400058291	PFscan:PS50011	PANTHER:PTHR44101	PANTHER:PTHR44101:SF4
InterPro:Prot_kinase_dom	SUPFAM:SSF52058	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	SignalP:SignalP-noTM	TMHMM:TMhelix
UniParc:UPI0002963B8E	RefSeq:XP_006357223.1	SEG:seg	:	:	:

Description

Inactive receptor kinase [Source:PGSC_GENE;Acc:PGSC0003DMG400022632]

Coordinates

chr5:-:6570501..6572604

Molecular Weight (calculated)

67309.4 Da

IEP (calculated)

6.873

GRAVY (calculated)

-0.036

Length

615 amino acids

Sequence
(BLAST)

001: MTAKSTNPIF FFTLFFLIFT LTPSFSIEND VKCLEGIKSA LSDPLNKLSS WSFSNTSVAS ICKLVGVSCW NEKENRLLSL QLPSMSLSGS LPPALQFCTS
101: LQSLDLSGNS FSGPIPVQIC SWLPYLVNLD LSSNSFSGSI PPEFINCKFL NTLVLNDNKL TGSIPFEIGR LDRLKRFSVS NNGLSGSIPD DLDRFSKDDF
201: DGNDGLCGNP IGSKCSNLSN KNLVIIIAAG VFGAAASLIL GFGIWRWFLV QPSKKDREFG DGKGGGGISD DWVDKLRAYK LVQVTLFQKP INKIKLNDLL
301: VATNSFASEN IVISTRTGIS YRAMLIDGSA LAIKRLSSCK LSEKQFRSEM NRLGQLRHPN LVPLLGFCIV DTERLLVYKH MQNGSLYSLL HGNLSTGIRN
401: DSSELGWLAR VRVAAGAARG LAWLHHGCQP PYVHQYLSSN VILVDDDFDA RITDFGLARL IGSADSNDSS FVNGDLGEFG YVAPEYSSTL VASMKGDVYS
501: FGVVLLELVT GRKPLGAGNA EEGFKGSLVD WVNQLSSSGH SKDAIDKAFA GSGQDDEILR VLQIACSCVV SRPKDRPSMY TVYQSLKSMV KEHCFSEHFD
601: EFPINLTKEN HDHKD

Best Arabidopsis Sequence Match ( AT1G27190.1 )
(BLAST)

001: MKKIFITLLW LLFISSFLCS SSSAEDDVLC LQGLKNSLID PSSRLSSWSF PNSSASSICK LTGVSCWNEK ENRIISLQLQ SMQLAGEIPE SLKLCRSLQS
101: LDLSGNDLSG SIPSQICSWL PYLVTLDLSG NKLGGSIPTQ IVECKFLNAL ILSDNKLSGS IPSQLSRLDR LRRLSLAGND LSGTIPSELA RFGGDDFSGN
201: NGLCGKPLSR CGALNGRNLS IIIVAGVLGA VGSLCVGLVI FWWFFIREGS RKKKGYGAGK SKDDSDWIGL LRSHKLVQVT LFQKPIVKIK LGDLMAATNN
301: FSSGNIDVSS RTGVSYKADL PDGSALAVKR LSACGFGEKQ FRSEMNKLGE LRHPNLVPLL GYCVVEDERL LVYKHMVNGT LFSQLHNGGL CDAVLDWPTR
401: RAIGVGAAKG LAWLHHGCQP PYLHQFISSN VILLDDDFDA RITDYGLAKL VGSRDSNDSS FNNGDLGELG YVAPEYSSTM VASLKGDVYG FGIVLLELVT
501: GQKPLSVING VEGFKGSLVD WVSQYLGTGR SKDAIDRSIC DKGHDEEILQ FLKIACSCVV SRPKERPTMI QVYESLKNMA DKHGVSEHYD EFPLVFNKQE
601: A

Arabidopsis Description

Probable inactive receptor kinase At1g27190 [Source:UniProtKB/Swiss-Prot;Acc:O04567]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.