Factsheet for PGSC0003DMT400075494

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
plasma membrane 9
extracellular 4
golgi 4
endoplasmic reticulum 4
vacuole 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
EpiLoc:	plasma membrane
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400070819

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48380.1	PGSC0003DMT400070819	AT1G71830.1	19616764

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g096720.1.1	Tomato	cytosol	22.51	92.25
PGSC0003DMT400075495	Potato	plasma membrane	79.9	79.08
PGSC0003DMT400070664	Potato	cytosol, plasma membrane, plastid	36.43	57.45
PGSC0003DMT400070657	Potato	peroxisome, plasma membrane, plastid	37.97	55.11
PGSC0003DMT400070666	Potato	plastid	40.89	51.07
PGSC0003DMT400070694	Potato	cytosol	17.7	48.58
PGSC0003DMT400070667	Potato	cytosol	18.38	48.42
TraesCS3D01G395600.1	Wheat	endoplasmic reticulum, vacuole	17.18	45.87
PGSC0003DMT400085762	Potato	extracellular	16.15	44.76
TraesCS3A01G401300.1	Wheat	cytosol	17.7	42.92
TraesCS3D01G395900.1	Wheat	extracellular, golgi, plasma membrane	18.21	41.9
CDY38095	Canola	plasma membrane	19.07	41.89
TraesCS3D01G396100.1	Wheat	plasma membrane	19.07	41.73
CDX69430	Canola	extracellular	17.01	41.42
TraesCS3D01G395100.1	Wheat	extracellular, plasma membrane	18.56	41.38
KXG33866	Sorghum	cytosol	17.35	41.06
CDX85492	Canola	plasma membrane	18.9	41.04
CDY38092	Canola	plasma membrane	18.9	41.04
TraesCS3B01G433700.1	Wheat	plasma membrane	18.56	40.91
GSMUA_Achr9P08150_001	Banana	cytosol, nucleus, plastid	28.01	40.65
Zm00001d039672_P001	Maize	plasma membrane	17.87	40.62
TraesCS3A01G400800.1	Wheat	extracellular	18.38	40.23
TraesCS3D01G395400.1	Wheat	extracellular, golgi, plasma membrane	16.84	40.0
TraesCS3B01G434200.1	Wheat	plasma membrane	18.73	39.93
TraesCS3B01G434000.1	Wheat	plasma membrane	17.87	39.85
PGSC0003DMT400071183	Potato	plasma membrane	41.92	39.8
TraesCS3D01G395700.1	Wheat	plasma membrane	18.38	39.78
TraesCS3B01G434100.1	Wheat	plasma membrane	18.38	39.63
TraesCS3A01G401200.1	Wheat	plasma membrane	18.04	38.89
HORVU3Hr1G090040.1	Barley	extracellular, plasma membrane	16.67	38.8
TraesCS3A01G400700.1	Wheat	extracellular, plasma membrane	17.7	38.58
VIT_05s0094g01290.t01	Wine grape	mitochondrion	8.42	38.28
Zm00001d007277_P001	Maize	plasma membrane	38.32	37.99
TraesCS7A01G410600.1	Wheat	extracellular	16.84	37.4
Bra040380.1-P	Field mustard	extracellular	14.95	37.02
CDY16992	Canola	cytosol, plasma membrane, plastid	12.71	36.82
EES19530	Sorghum	plasma membrane	38.32	36.8
EES09539	Sorghum	plasma membrane	38.14	36.76
TraesCS3A01G401000.1	Wheat	cytosol	10.82	36.63
CDX85334	Canola	plasma membrane	38.83	36.28
TraesCS4B01G086300.1	Wheat	plasma membrane	37.63	36.14
TraesCS4D01G084000.1	Wheat	plasma membrane	37.63	36.14
HORVU1Hr1G064780.1	Barley	plasma membrane	37.46	36.09
TraesCS3B01G433800.1	Wheat	extracellular	13.92	36.0
TraesCS4A01G229800.1	Wheat	plasma membrane	37.46	35.97
CDY48749	Canola	plasma membrane	38.49	35.96
TraesCS1D01G259400.1	Wheat	plasma membrane	37.29	35.93
CDY07991	Canola	plasma membrane	15.98	35.91
TraesCS1A01G259600.1	Wheat	plasma membrane	37.29	35.87
CDY05685	Canola	plasma membrane	38.49	35.84
HORVU4Hr1G014760.3	Barley	plasma membrane	37.29	35.81
TraesCS1B01G269900.1	Wheat	plasma membrane	37.11	35.7
Bra020705.1-P	Field mustard	plasma membrane	33.85	35.69
AT5G48380.1	Thale cress	plasma membrane	37.63	35.32
TraesCS3A01G401100.1	Wheat	extracellular, plasma membrane	17.35	35.19
Zm00001d038195_P001	Maize	plasma membrane	37.8	34.92
Os01t0891601-01	Rice	extracellular, golgi, plasma membrane	15.46	34.88
PGSC0003DMT400017876	Potato	plasma membrane	36.6	34.8
Bra001255.1-P	Field mustard	plasma membrane	15.46	34.75
PGSC0003DMT400003278	Potato	plasma membrane	35.4	34.28
Bra038824.1-P	Field mustard	cytosol	19.24	33.84
PGSC0003DMT400058291	Potato	plasma membrane	35.74	33.82
Bra037490.1-P	Field mustard	plastid	26.98	33.55
CDX86309	Canola	golgi, mitochondrion, plasma membrane, plastid	26.63	33.12
TraesCS3B01G433900.1	Wheat	extracellular, mitochondrion, nucleus, plasma membrane	17.18	32.36
TraesCS3A01G400900.1	Wheat	extracellular, plasma membrane	15.81	32.17
GSMUA_Achr6P28640_001	Banana	plastid	12.89	31.91
GSMUA_Achr2P05730_001	Banana	cytosol, peroxisome, plasma membrane	22.51	31.34
PGSC0003DMT400093490	Potato	extracellular	14.26	31.09
KRH42000	Soybean	vacuole	20.45	30.83
Bra006366.1-P	Field mustard	mitochondrion	16.84	30.15
CDX70708	Canola	extracellular, plasma membrane, vacuole	18.04	29.33
TraesCS3D01G395800.1	Wheat	plastid	17.87	29.3
Os01t0891300-01	Rice	plasma membrane, plastid	0.52	0.84

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.10.1	Gene3D:3.30.200.20	Gene3D:3.80.10.10	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006464
GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	InterPro:IPR032675	InterPro:Kinase-like_dom_sf
InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf	UniProt:M1CV92	PFAM:PF07714	PFAM:PF08263	EnsemblPlantsGene:PGSC0003DMG401029358
PGSC:PGSC0003DMG401029358	EnsemblPlants:PGSC0003DMT400075494	PFscan:PS50011	PANTHER:PTHR44101	PANTHER:PTHR44101:SF1	InterPro:Prot_kinase_dom
SUPFAM:SSF52058	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000295882F
SEG:seg	:	:	:	:	:

Description

Protein kinase domain containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG401029358]

Coordinates

chr12:+:58290332..58292872

Molecular Weight (calculated)

66122.5 Da

IEP (calculated)

5.772

GRAVY (calculated)

-0.049

Length

582 amino acids

Sequence
(BLAST)

001: MEKTNSRTRP FFFICAFLGF LLILLSRICV CSAAESDLYC LKSIKDSLQD PCNSLGSWDF SNVTEGFICQ FRGIECWHDY ENKVMNIRLS DSGLIGEFPQ
101: GIRNCTSLIG LDLSDNNLYG TIPSDISVIV EHVTTLDLSS NKFSGNIPPD IANCEYLNFL MLNNNNLGGE IPSRIGSLSR LNTFSVANNN LTGPVPSFVN
201: IQITAHSFAN NSELCGKPLK ECEYYEDSWI WKHVDRASFI EAFVCGWVLF FTLVLVLCFF KFPVKVINKI VSLNIWKLRK EDLTSGSEED LSSHQKILML
301: EKFVTRMSFT ELENATSDFS EDYLVGNGML GKVYKAILPN DWTLAIKKLN DSENLEDEFV SEITTLGGLR HRNLLPLIGF CVEREKKLLV YKYMFNGNLH
401: EWLHSNEDKA KILDFRLRVK IALGIAKGVA WLHHGYKLHV AHGSISTRCI LLDQNFEPKI SNFWEAKIWS KNDTALSWSL FPVAEYSCLG SYKKDIYCFG
501: VLLLELVTGK EPHELTSSRN LFDHSPCLLD ADKDLLGKGI NDLILEFLEL SCDCVKFFPN ERPTMLKVYD KLKTISQGRN DD

Best Arabidopsis Sequence Match ( AT3G28450.1 )
(BLAST)

001: MKEIGSKPRK LLPLCFIIFL CFCSSVMAAD EDDIRCLRGL KASLTDPQNA LKSWNFDNTT LGFLCNFVGV SCWNNQENRV INLELRDMGL SGKIPDSLQY
101: CASLQKLDLS SNRLSGNIPT ELCNWLPFLV SLDLSNNELN GEIPPDLAKC SFVNSLVLSD NRLSGQIPVQ FSALGRLGRF SVANNDLSGR IPVFFSSPSY
201: SSDDFSGNKG LCGRPLSSSC GGLSKKNLGI IIAAGVFGAA ASMLLAFGIW WYYHLKWTRR RRSGLTEVGV SGLAQRLRSH KLTQVSLFQK PLVKVKLGDL
301: MAATNNFNSE NIIVSTRTGT TYKALLPDGS ALAVKHLSTC KLGEREFRYE MNQLWELRHS NLAPLLGFCV VEEEKFLVYK YMSNGTLHSL LDSNRGELDW
401: STRFRIGLGA ARGLAWLHHG CRPPILHQNI CSSVILIDED FDARIIDSGL ARLMVPSDNN ESSFMTGDLG EFGYVAPEYS TTMLASLKGD VYGLGVVLLE
501: LATGLKAVGG EGFKGSLVDW VKQLESSGRI AETFDENIRG KGHDEEISKF VEIALNCVSS RPKERWSMFQ AYQSLKAIAE KQGYSFSEQD DDFPLIFDTQ
601: ENEKV

Arabidopsis Description

BIR2Inactive LRR receptor-like serine/threonine-protein kinase BIR2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSI9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.