Factsheet for TraesCS3B01G433900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, extracellular, nucleus

Predictor Summary:

extracellular 1
mitochondrion 2
nucleus 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G343100.1
TraesCS2B01G340700.1
TraesCS2D01G321400.1
TraesCS6A01G203600.2
TraesCS6B01G223700.3
TraesCS6D01G186900.2
TraesCS7A01G293300.3
TraesCS7B01G182300.1
TraesCS7D01G291200.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48380.1	TraesCS2A01G343100.1	AT1G71830.1	19616764
AT5G48380.1	TraesCS2B01G340700.1	AT1G71830.1	19616764
AT5G48380.1	TraesCS2D01G321400.1	AT1G71830.1	19616764
AT5G48380.1	TraesCS6A01G203600.2	AT1G71830.1	19616764
AT5G48380.1	TraesCS6B01G223700.3	AT1G71830.1	19616764
AT5G48380.1	TraesCS6D01G186900.2	AT1G71830.1	19616764
AT5G48380.1	TraesCS7A01G293300.3	AT1G71830.1	19616764
AT5G48380.1	TraesCS7B01G182300.1	AT1G71830.1	19616764
AT5G48380.1	TraesCS7D01G291200.3	AT1G71830.1	19616764

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G400900.1	Wheat	extracellular, plasma membrane	79.29	85.66
TraesCS3B01G433800.1	Wheat	extracellular	46.28	63.56
TraesCS3B01G434200.1	Wheat	plasma membrane	51.46	58.24
TraesCS3B01G433700.1	Wheat	plasma membrane	48.87	57.2
TraesCS3B01G434100.1	Wheat	plasma membrane	49.19	56.3
TraesCS3B01G434000.1	Wheat	plasma membrane	46.93	55.56
Bra040380.1-P	Field mustard	extracellular	30.42	40.0
CDY07991	Canola	plasma membrane	33.33	39.77
CDY38095	Canola	plasma membrane	33.98	39.62
TraesCS2B01G364300.1	Wheat	extracellular	27.51	38.81
CDY38092	Canola	plasma membrane	33.66	38.81
CDX85492	Canola	plasma membrane	33.66	38.81
Bra001255.1-P	Field mustard	plasma membrane	32.04	38.22
CDX69430	Canola	extracellular	29.45	38.08
CDY16992	Canola	cytosol, plasma membrane, plastid	23.3	35.82
Bra006366.1-P	Field mustard	mitochondrion	32.36	30.77
CDX70708	Canola	extracellular, plasma membrane, vacuole	34.95	30.17
TraesCS5B01G161200.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	25.89	28.17
PGSC0003DMT400070667	Potato	cytosol	18.45	25.79
VIT_05s0094g01290.t01	Wine grape	mitochondrion	10.03	24.22
TraesCS1B01G269900.1	Wheat	plasma membrane	43.69	22.31
TraesCS4B01G086300.1	Wheat	plasma membrane	37.54	19.14
CDY48749	Canola	plasma membrane	38.51	19.1
CDY05685	Canola	plasma membrane	36.57	18.08
AT5G48380.1	Thale cress	plasma membrane	36.25	18.06
CDX85334	Canola	plasma membrane	35.28	17.5
PGSC0003DMT400075494	Potato	plasma membrane	32.36	17.18
PGSC0003DMT400075495	Potato	plasma membrane	32.69	17.18
Solyc06g082920.2.1	Tomato	plasma membrane	33.33	16.8
VIT_00s0220g00120.t01	Wine grape	plasma membrane	33.01	16.43
PGSC0003DMT400071183	Potato	plasma membrane	32.36	16.31
VIT_00s2085g00010.t01	Wine grape	plasma membrane	32.36	16.16
Bra020705.1-P	Field mustard	plasma membrane	28.48	15.94
PGSC0003DMT400070664	Potato	cytosol, plasma membrane, plastid	18.12	15.18
GSMUA_Achr9P08150_001	Banana	cytosol, nucleus, plastid	19.42	14.96
PGSC0003DMT400070657	Potato	peroxisome, plasma membrane, plastid	17.8	13.72
Solyc07g006480.2.1	Tomato	plasma membrane	28.8	13.63
Solyc12g096710.1.1	Tomato	plasma membrane	32.04	12.27
GSMUA_Achr2P05730_001	Banana	cytosol, peroxisome, plasma membrane	13.27	9.81
PGSC0003DMT400070666	Potato	plastid	13.92	9.23
Bra037490.1-P	Field mustard	plastid	13.59	8.97
CDX86309	Canola	golgi, mitochondrion, plasma membrane, plastid	12.95	8.55
GSMUA_Achr6P28640_001	Banana	plastid	2.91	3.83
Bra038824.1-P	Field mustard	cytosol	3.24	3.02
TraesCS2B01G364400.1	Wheat	vacuole	1.94	2.32
Solyc12g096720.1.1	Tomato	cytosol	0.97	2.11
PGSC0003DMT400070694	Potato	cytosol	0.97	1.42
KRH21660	Soybean	cytosol	0.32	0.63

Protein Annotations

EnsemblPlants:TraesCS3B01G433900.1	EnsemblPlantsGene:TraesCS3B01G433900	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	PANTHER:PTHR44101
PANTHER:PTHR44101:SF3	PFAM:PF08263	PFAM:PF13855	SEG:seg	SUPFAM:SSF52058	TMHMM:TMhelix
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr3B:-:672575612..672581246

Molecular Weight (calculated)

34063.0 Da

IEP (calculated)

8.736

GRAVY (calculated)

-0.011

Length

309 amino acids

Sequence
(BLAST)

001: MIGRRDPRAR KRHLEVRPGG GSAMHGYTRL VVWLLLLSSS SSYFGHGISD SDVQCLKGLK QSVIDPNGVL EGSWSFSNNG IDGYICGFTG VECWHPDQNR
101: VLSLSLGSLG LGGPFPQGLR LCSFMTALDM SDNNFSGPLP EHIFEQTPYV TYLDLSNNSF SGVIPASIAN MTYLSTFALQ HNQFDGGIPA QLGNASQLIS
201: FNVADNSLSG PVPDTLQSFP AANFTGNPEL CGAPLDKKCK KRFRVRIHVR LVRIREMFVR IQKLLHRIND ASIIGASAGF IFGFVVAFYF PHKFLFCERL
301: QPYTFRVCG

Best Arabidopsis Sequence Match ( AT5G48380.1 )
(BLAST)

001: MMMGRLVFVI WLYNCLCLLL LSSLVDADQA NIDCLRTFKS QVEDPNRYLS TWVFGNETAG YICKFSGVTC WHDDENRVLS IKLSGYGLRG VFPPAVKLCA
101: DLTGLDLSRN NFSGPLPANI STLIPLVTIL DLSYNSFSGE IPMLISNITF LNTLMLQHNQ FTGTLPPQLA QLGRLKTFSV SDNRLVGPIP NFNQTLQFKQ
201: ELFANNLDLC GKPLDDCKSA SSSRGKVVII AAVGGLTAAA LVVGVVLFFY FRKLGAVRKK QDDPEGNRWA KSLKGQKGVK VFMFKKSVSK MKLSDLMKAT
301: EEFKKDNIIA TGRTGTMYKG RLEDGSLLMI KRLQDSQRSE KEFDAEMKTL GSVKNRNLVP LLGYCVANKE RLLMYEYMAN GYLYDQLHPA DEESFKPLDW
401: PSRLKIAIGT AKGLAWLHHS CNPRIIHRNI SSKCILLTAE FEPKISDFGL ARLMNPIDTH LSTFVNGEFG DFGYVAPEYS RTMVATPKGD VYSFGVVLLE
501: LVTGQKATSV TKVSEEKAEE ENFKGNLVEW ITKLSSESKL QEAIDRSLLG NGVDDEIFKV LKVACNCVLP EIAKQRPTMF EVYQLLRAIG ESYNFTADDD
601: ILIPSESGEG DFIEELIVAR

Arabidopsis Description

BIR1Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASS4]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.