Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- extracellular 2
- golgi 1
- plasma membrane 2
- endoplasmic reticulum 1
- vacuole 1
- mitochondrion 5
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_18s0164g00070.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G48380.1 | VIT_18s0164g00070.t01 | AT1G71830.1 | 19616764 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G401000.1 | Wheat | cytosol | 26.56 | 19.77 |
| PGSC0003DMT400070667 | Potato | cytosol | 30.47 | 17.65 |
| TraesCS3A01G401300.1 | Wheat | cytosol | 28.12 | 15.0 |
| TraesCS3D01G395900.1 | Wheat | extracellular, golgi, plasma membrane | 28.12 | 14.23 |
| TraesCS3D01G395600.1 | Wheat | endoplasmic reticulum, vacuole | 23.44 | 13.76 |
| TraesCS7A01G410600.1 | Wheat | extracellular | 28.12 | 13.74 |
| TraesCS3D01G396100.1 | Wheat | plasma membrane | 28.12 | 13.53 |
| TraesCS3A01G400800.1 | Wheat | extracellular | 28.12 | 13.53 |
| CDY38095 | Canola | plasma membrane | 27.34 | 13.21 |
| TraesCS3B01G434200.1 | Wheat | plasma membrane | 28.12 | 13.19 |
| CDX85492 | Canola | plasma membrane | 27.34 | 13.06 |
| CDY38092 | Canola | plasma membrane | 27.34 | 13.06 |
| TraesCS3B01G434000.1 | Wheat | plasma membrane | 26.56 | 13.03 |
| KXG33866 | Sorghum | cytosol | 25.0 | 13.01 |
| TraesCS3B01G434100.1 | Wheat | plasma membrane | 27.34 | 12.96 |
| CDY16992 | Canola | cytosol, plasma membrane, plastid | 20.31 | 12.94 |
| TraesCS3A01G400700.1 | Wheat | extracellular, plasma membrane | 26.56 | 12.73 |
| TraesCS3D01G395100.1 | Wheat | extracellular, plasma membrane | 25.78 | 12.64 |
| TraesCS3D01G395700.1 | Wheat | plasma membrane | 26.56 | 12.64 |
| CDX69430 | Canola | extracellular | 23.44 | 12.55 |
| TraesCS3B01G433700.1 | Wheat | plasma membrane | 25.78 | 12.5 |
| PGSC0003DMT400070664 | Potato | cytosol, plasma membrane, plastid | 35.16 | 12.2 |
| VIT_07s0151g00470.t01 | Wine grape | plasma membrane | 25.0 | 11.85 |
| PGSC0003DMT400070657 | Potato | peroxisome, plasma membrane, plastid | 36.72 | 11.72 |
| TraesCS3A01G401200.1 | Wheat | plasma membrane | 24.22 | 11.48 |
| TraesCS3A01G401100.1 | Wheat | extracellular, plasma membrane | 25.0 | 11.15 |
| Zm00001d039672_P001 | Maize | plasma membrane | 21.88 | 10.94 |
| Os01t0891601-01 | Rice | extracellular, golgi, plasma membrane | 21.88 | 10.85 |
| Bra001255.1-P | Field mustard | plasma membrane | 21.88 | 10.81 |
| CDY07991 | Canola | plasma membrane | 21.88 | 10.81 |
| HORVU3Hr1G090040.1 | Barley | extracellular, plasma membrane | 21.09 | 10.8 |
| TraesCS3A01G400900.1 | Wheat | extracellular, plasma membrane | 23.44 | 10.49 |
| KRH21657 | Soybean | cytosol | 34.38 | 10.4 |
| TraesCS3D01G395400.1 | Wheat | extracellular, golgi, plasma membrane | 19.53 | 10.2 |
| Bra006366.1-P | Field mustard | mitochondrion | 25.78 | 10.15 |
| PGSC0003DMT400070666 | Potato | plastid | 36.72 | 10.09 |
| TraesCS3B01G433900.1 | Wheat | extracellular, mitochondrion, nucleus, plasma membrane | 24.22 | 10.03 |
| Bra037490.1-P | Field mustard | plastid | 35.94 | 9.83 |
| TraesCS3B01G433800.1 | Wheat | extracellular | 17.19 | 9.78 |
| TraesCS3D01G395800.1 | Wheat | plastid | 26.56 | 9.58 |
| CDX70708 | Canola | extracellular, plasma membrane, vacuole | 25.78 | 9.22 |
| CDX86309 | Canola | golgi, mitochondrion, plasma membrane, plastid | 32.81 | 8.97 |
| PGSC0003DMT400075494 | Potato | plasma membrane | 38.28 | 8.42 |
| PGSC0003DMT400075495 | Potato | plasma membrane | 36.72 | 7.99 |
| Bra020705.1-P | Field mustard | plasma membrane | 33.59 | 7.79 |
| VIT_00s0220g00120.t01 | Wine grape | plasma membrane | 37.5 | 7.73 |
| CDX85334 | Canola | plasma membrane | 36.72 | 7.54 |
| KRH41999 | Soybean | cytosol, golgi, plasma membrane | 35.94 | 7.48 |
| VIT_00s2085g00010.t01 | Wine grape | plasma membrane | 35.94 | 7.43 |
| AT5G48380.1 | Thale cress | plasma membrane | 35.94 | 7.42 |
| EES19530 | Sorghum | plasma membrane | 34.38 | 7.26 |
| Bra040380.1-P | Field mustard | extracellular | 13.28 | 7.23 |
| Solyc07g006480.2.1 | Tomato | plasma membrane | 36.72 | 7.2 |
| KRH42002 | Soybean | plasma membrane | 35.16 | 7.13 |
| TraesCS1B01G269900.1 | Wheat | plasma membrane | 33.59 | 7.11 |
| TraesCS1D01G259400.1 | Wheat | plasma membrane | 32.81 | 6.95 |
| TraesCS1A01G259600.1 | Wheat | plasma membrane | 32.81 | 6.94 |
| TraesCS4B01G086300.1 | Wheat | plasma membrane | 32.81 | 6.93 |
| HORVU4Hr1G014760.3 | Barley | plasma membrane | 32.81 | 6.93 |
| CDY48749 | Canola | plasma membrane | 33.59 | 6.9 |
| Zm00001d038195_P001 | Maize | plasma membrane | 33.59 | 6.83 |
| Zm00001d007277_P001 | Maize | plasma membrane | 31.25 | 6.81 |
| EES09539 | Sorghum | plasma membrane | 32.03 | 6.79 |
| TraesCS4A01G229800.1 | Wheat | plasma membrane | 32.03 | 6.77 |
| TraesCS4D01G084000.1 | Wheat | plasma membrane | 32.03 | 6.77 |
| CDY05685 | Canola | plasma membrane | 32.81 | 6.72 |
| HORVU1Hr1G064780.1 | Barley | plasma membrane | 31.25 | 6.62 |
| VIT_14s0066g02250.t01 | Wine grape | plasma membrane | 31.25 | 6.53 |
| VIT_01s0026g01060.t01 | Wine grape | plasma membrane | 30.47 | 6.38 |
| GSMUA_Achr9P08150_001 | Banana | cytosol, nucleus, plastid | 18.75 | 5.99 |
| GSMUA_Achr2P05730_001 | Banana | cytosol, peroxisome, plasma membrane | 17.97 | 5.5 |
| Solyc12g096710.1.1 | Tomato | plasma membrane | 34.38 | 5.45 |
| VIT_05s0094g01270.t01 | Wine grape | cytosol | 10.16 | 3.87 |
| Solyc12g096720.1.1 | Tomato | cytosol | 3.91 | 3.52 |
| Bra038824.1-P | Field mustard | cytosol | 8.59 | 3.32 |
| KRH21659 | Soybean | cytosol | 5.47 | 2.97 |
| PGSC0003DMT400070694 | Potato | cytosol | 4.69 | 2.83 |
| GSMUA_Achr6P28640_001 | Banana | plastid | 3.91 | 2.13 |
| KRH49900 | Soybean | cytosol | 3.12 | 1.57 |
| VIT_16s0039g01990.t01 | Wine grape | cytosol | 3.12 | 1.24 |
| Os01t0891300-01 | Rice | plasma membrane, plastid | 0.0 | 0.0 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.2 | ProteinID:CCB49424 | ProteinID:CCB49424.1 | ncoils:Coil | UniProt:F6HB37 |
| EMBL:FN595507 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004672 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0006464 | GO:GO:0006468 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016301 | GO:GO:0016740 | GO:GO:0019538 |
| InterPro:IPR032675 | InterPro:LRR_dom_sf | PANTHER:PTHR44101 | SUPFAM:SSF52058 | TMHMM:TMhelix | UniParc:UPI0002109874 |
| ArrayExpress:VIT_05s0094g01290 | EnsemblPlantsGene:VIT_05s0094g01290 | EnsemblPlants:VIT_05s0094g01290.t01 | : | : | : |
Description
No Description!
Coordinates
chr5:-:24546921..24549042
Molecular Weight (calculated)
13943.9 Da
IEP (calculated)
10.206
GRAVY (calculated)
-0.063
Length
128 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSCVRLNHL VLNKNQLTGQ IPPQLGQLYW IKDLNVANNR LSGPVPTFVS YSALPESYAN NKGLCGGPLK ACEEQGKAKD SFKSGFAVGW AVSAVSVTAA
101: FPCSYVIQQF AVISLTRIGR IRRKKDQT
101: FPCSYVIQQF AVISLTRIGR IRRKKDQT
001: MMMGRLVFVI WLYNCLCLLL LSSLVDADQA NIDCLRTFKS QVEDPNRYLS TWVFGNETAG YICKFSGVTC WHDDENRVLS IKLSGYGLRG VFPPAVKLCA
101: DLTGLDLSRN NFSGPLPANI STLIPLVTIL DLSYNSFSGE IPMLISNITF LNTLMLQHNQ FTGTLPPQLA QLGRLKTFSV SDNRLVGPIP NFNQTLQFKQ
201: ELFANNLDLC GKPLDDCKSA SSSRGKVVII AAVGGLTAAA LVVGVVLFFY FRKLGAVRKK QDDPEGNRWA KSLKGQKGVK VFMFKKSVSK MKLSDLMKAT
301: EEFKKDNIIA TGRTGTMYKG RLEDGSLLMI KRLQDSQRSE KEFDAEMKTL GSVKNRNLVP LLGYCVANKE RLLMYEYMAN GYLYDQLHPA DEESFKPLDW
401: PSRLKIAIGT AKGLAWLHHS CNPRIIHRNI SSKCILLTAE FEPKISDFGL ARLMNPIDTH LSTFVNGEFG DFGYVAPEYS RTMVATPKGD VYSFGVVLLE
501: LVTGQKATSV TKVSEEKAEE ENFKGNLVEW ITKLSSESKL QEAIDRSLLG NGVDDEIFKV LKVACNCVLP EIAKQRPTMF EVYQLLRAIG ESYNFTADDD
601: ILIPSESGEG DFIEELIVAR
101: DLTGLDLSRN NFSGPLPANI STLIPLVTIL DLSYNSFSGE IPMLISNITF LNTLMLQHNQ FTGTLPPQLA QLGRLKTFSV SDNRLVGPIP NFNQTLQFKQ
201: ELFANNLDLC GKPLDDCKSA SSSRGKVVII AAVGGLTAAA LVVGVVLFFY FRKLGAVRKK QDDPEGNRWA KSLKGQKGVK VFMFKKSVSK MKLSDLMKAT
301: EEFKKDNIIA TGRTGTMYKG RLEDGSLLMI KRLQDSQRSE KEFDAEMKTL GSVKNRNLVP LLGYCVANKE RLLMYEYMAN GYLYDQLHPA DEESFKPLDW
401: PSRLKIAIGT AKGLAWLHHS CNPRIIHRNI SSKCILLTAE FEPKISDFGL ARLMNPIDTH LSTFVNGEFG DFGYVAPEYS RTMVATPKGD VYSFGVVLLE
501: LVTGQKATSV TKVSEEKAEE ENFKGNLVEW ITKLSSESKL QEAIDRSLLG NGVDDEIFKV LKVACNCVLP EIAKQRPTMF EVYQLLRAIG ESYNFTADDD
601: ILIPSESGEG DFIEELIVAR
Arabidopsis Description
BIR1Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASS4]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.