Skip to main content
crop-pal logo
Canola
Search for another protein from :
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:
  • nucleus 1
  • plastid 2
  • cytosol 1
  • mitochondrion 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plasma membrane, plastid
Any Predictor:cytosol, nucleus, plasma membrane, plastid
BaCelLo:nucleus
iPSORT:plastid
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX68299
CDX72833
CDX96350
CDY36679

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G48380.1 CDX68299 AT1G71830.1 19616764
AT5G48380.1 CDX72833 AT1G71830.1 19616764
AT5G48380.1 CDX96350 AT1G71830.1 19616764
AT5G48380.1 CDY36679 AT1G71830.1 19616764
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX69430 Canola extracellular 78.11 65.69
CDY38095 Canola plasma membrane 69.65 52.83
CDX85492 Canola plasma membrane 69.65 52.24
CDY38092 Canola plasma membrane 69.15 51.87
CDX70708 Canola extracellular, plasma membrane, vacuole 60.2 33.8
TraesCS3A01G401300.1 Wheat cytosol 37.81 31.67
CDY07991 Canola plasma membrane 40.8 31.66
TraesCS3D01G395700.1 Wheat plasma membrane 40.3 30.11
Os01t0892300-01 Rice extracellular, golgi, plasma membrane 41.79 30.11
TraesCS3D01G395600.1 Wheat endoplasmic reticulum, vacuole 31.84 29.36
KXG33866 Sorghum cytosol 35.82 29.27
TraesCS3D01G395900.1 Wheat extracellular, golgi, plasma membrane 36.82 29.25
TraesCS3A01G400700.1 Wheat extracellular, plasma membrane 38.81 29.21
TraesCS3D01G396100.1 Wheat plasma membrane 38.31 28.95
TraesCS3B01G433700.1 Wheat plasma membrane 37.81 28.79
TraesCS3B01G434200.1 Wheat plasma membrane 38.31 28.21
TraesCS3B01G434100.1 Wheat plasma membrane 37.81 28.15
TraesCS3B01G434000.1 Wheat plasma membrane 36.32 27.97
TraesCS3A01G400800.1 Wheat extracellular 36.82 27.82
TraesCS3D01G395100.1 Wheat extracellular, plasma membrane 35.82 27.59
TraesCS7A01G410600.1 Wheat extracellular 35.82 27.48
TraesCS3A01G401200.1 Wheat plasma membrane 36.82 27.41
TraesCS3D01G395400.1 Wheat extracellular, golgi, plasma membrane 33.33 27.35
Os01t0891601-01 Rice extracellular, golgi, plasma membrane 33.33 25.97
TraesCS3A01G401100.1 Wheat extracellular, plasma membrane 35.82 25.09
Zm00001d039672_P001 Maize plasma membrane 31.34 24.61
TraesCS3A01G400900.1 Wheat extracellular, plasma membrane 34.33 24.13
KRH66279 Soybean cytosol 21.89 24.04
HORVU3Hr1G090040.1 Barley extracellular, plasma membrane 29.35 23.6
TraesCS3B01G433900.1 Wheat extracellular, mitochondrion, nucleus, plasma membrane 35.82 23.3
TraesCS3D01G395800.1 Wheat plastid 40.8 23.1
Os01t0891700-01 Rice plasma membrane 34.83 22.88
TraesCS3B01G433800.1 Wheat extracellular 23.38 20.89
VIT_05s0094g01290.t01 Wine grape mitochondrion 12.94 20.31
TraesCS3A01G401000.1 Wheat cytosol 15.92 18.6
PGSC0003DMT400070667 Potato cytosol 19.9 18.1
CDY18672 Canola mitochondrion, plasma membrane 19.9 16.46
CDX81298 Canola extracellular, plasma membrane 19.9 16.46
CDY48749 Canola plasma membrane 50.75 16.37
CDY05959 Canola extracellular, plasma membrane 22.39 16.3
CDX85334 Canola plasma membrane 49.75 16.05
CDY05685 Canola plasma membrane 49.25 15.84
AT5G48380.1 Thale cress plasma membrane 46.77 15.16
KRH66278 Soybean cytosol 33.83 14.81
CDX85197 Canola plastid 15.92 14.41
TraesCS1A01G259600.1 Wheat plasma membrane 41.29 13.72
TraesCS1B01G269900.1 Wheat plasma membrane 41.29 13.72
PGSC0003DMT400071183 Potato plasma membrane 41.79 13.7
VIT_00s0220g00120.t01 Wine grape plasma membrane 42.29 13.69
Os05t0414700-01 Rice plasma membrane 41.29 13.67
HORVU1Hr1G064780.1 Barley plasma membrane 40.8 13.58
TraesCS1D01G259400.1 Wheat plasma membrane 40.8 13.58
Solyc06g082920.2.1 Tomato plasma membrane 41.29 13.54
KRH21657 Soybean cytosol 28.36 13.48
PGSC0003DMT400075495 Potato plasma membrane 39.3 13.44
KRH40243 Soybean plasma membrane 40.8 13.29
Zm00001d007277_P001 Maize plasma membrane 38.81 13.29
Zm00001d038195_P001 Maize plasma membrane 41.29 13.17
EES19530 Sorghum plasma membrane 39.3 13.04
KRH00983 Soybean nucleus, plasma membrane 39.8 12.95
EES09539 Sorghum plasma membrane 38.81 12.91
VIT_00s2085g00010.t01 Wine grape plasma membrane 39.3 12.76
PGSC0003DMT400075494 Potato plasma membrane 36.82 12.71
CDX86433 Canola plasma membrane 34.83 12.5
KRH07291 Soybean plasma membrane 37.81 12.38
PGSC0003DMT400070664 Potato cytosol, plasma membrane, plastid 22.39 12.2
TraesCS4B01G086300.1 Wheat plasma membrane 36.32 12.05
TraesCS4A01G229800.1 Wheat plasma membrane 36.32 12.05
TraesCS4D01G084000.1 Wheat plasma membrane 36.32 12.05
HORVU4Hr1G014760.3 Barley plasma membrane 36.32 12.05
Solyc07g006480.2.1 Tomato plasma membrane 38.31 11.79
CDY04020 Canola plasma membrane 33.83 11.3
CDY47244 Canola plasma membrane 33.33 11.15
CDY14686 Canola plasma membrane 32.84 11.06
CDY16228 Canola plasma membrane 32.84 11.02
PGSC0003DMT400070657 Potato peroxisome, plasma membrane, plastid 21.89 10.97
CDY11627 Canola plasma membrane 32.34 10.92
KRH41999 Soybean cytosol, golgi, plasma membrane 32.84 10.73
CDY38780 Canola plasma membrane 31.84 10.67
KRH42002 Soybean plasma membrane 33.33 10.62
GSMUA_Achr2P05730_001 Banana cytosol, peroxisome, plasma membrane 20.9 10.05
CDX86309 Canola golgi, mitochondrion, plasma membrane, plastid 23.38 10.04
Solyc12g096710.1.1 Tomato plasma membrane 39.3 9.79
GSMUA_Achr9P08150_001 Banana cytosol, nucleus, plastid 17.91 8.98
Os11t0249900-01 Rice plasma membrane 19.9 7.98
KRH66274 Soybean plasma membrane 16.92 7.54
KRH66277 Soybean plasma membrane 16.92 7.54
PGSC0003DMT400070666 Potato plastid 16.92 7.3
GSMUA_Achr6P28640_001 Banana plastid 5.47 4.68
KRH37646 Soybean cytosol 4.98 4.1
KRH66275 Soybean mitochondrion, plasma membrane 4.98 4.02
KRG88547 Soybean cytosol 5.97 3.69
Solyc12g096720.1.1 Tomato cytosol 2.49 3.52
CDX85198 Canola golgi, plasma membrane 5.47 2.89
KRH49900 Soybean cytosol 2.99 2.35
KRH21659 Soybean cytosol 2.49 2.12
PGSC0003DMT400070694 Potato cytosol 1.99 1.89
KRH42000 Soybean vacuole 3.48 1.81
KRH21660 Soybean cytosol 1.0 1.26
Os01t0891300-01 Rice plasma membrane, plastid 0.5 0.28
Protein Annotations
EnsemblPlants:CDY16992EnsemblPlantsGene:GSBRNA2T00094935001Gene3D:3.80.10.10GO:A0A078FW73GO:GO:0005575GO:GO:0016020
GO:GO:0016021InterPro:IPR032675InterPro:LRR_N_plant-typInterPro:LRR_dom_sfPANTHER:PTHR44101PFAM:PF08263
ProteinID:CDY16992ProteinID:CDY16992.1SEG:segSUPFAM:SSF52058TMHMM:TMhelixUniParc:UPI0004EC1F9D
UniProt:A0A078FW73MapMan:35.1::::
Description
BnaC09g41190DBnaC09g41190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FW73]
Coordinates
chrLK032068:-:764304..765243
Molecular Weight (calculated)
22090.5 Da
IEP (calculated)
8.057
GRAVY (calculated)
-0.095
Length
201 amino acids
Sequence
(BLAST)
001: MISCPGSISF AGANKADVNC LRNFKSGVTD PNDYLSSWVF DNQTAGFICK FSGVTCWHID ENRVLSIKVT GFGLKGEFPV GIKQCSVLKN NFTGPLPPEL
101: VSLPRLTKFS VAFNQLTGPV PNFNLKFGRE NFSSNEGLCG QPMDPCVDPE EDIIRLGKIG AAVGAALFAP LGAFLDWFVF SGRKKKQEDR RHHSWIFHIG
201: D
Best Arabidopsis Sequence Match ( AT5G48380.1 )
(BLAST)
001: MMMGRLVFVI WLYNCLCLLL LSSLVDADQA NIDCLRTFKS QVEDPNRYLS TWVFGNETAG YICKFSGVTC WHDDENRVLS IKLSGYGLRG VFPPAVKLCA
101: DLTGLDLSRN NFSGPLPANI STLIPLVTIL DLSYNSFSGE IPMLISNITF LNTLMLQHNQ FTGTLPPQLA QLGRLKTFSV SDNRLVGPIP NFNQTLQFKQ
201: ELFANNLDLC GKPLDDCKSA SSSRGKVVII AAVGGLTAAA LVVGVVLFFY FRKLGAVRKK QDDPEGNRWA KSLKGQKGVK VFMFKKSVSK MKLSDLMKAT
301: EEFKKDNIIA TGRTGTMYKG RLEDGSLLMI KRLQDSQRSE KEFDAEMKTL GSVKNRNLVP LLGYCVANKE RLLMYEYMAN GYLYDQLHPA DEESFKPLDW
401: PSRLKIAIGT AKGLAWLHHS CNPRIIHRNI SSKCILLTAE FEPKISDFGL ARLMNPIDTH LSTFVNGEFG DFGYVAPEYS RTMVATPKGD VYSFGVVLLE
501: LVTGQKATSV TKVSEEKAEE ENFKGNLVEW ITKLSSESKL QEAIDRSLLG NGVDDEIFKV LKVACNCVLP EIAKQRPTMF EVYQLLRAIG ESYNFTADDD
601: ILIPSESGEG DFIEELIVAR
Arabidopsis Description
BIR1Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASS4]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.