CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 7
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73678
CDX92401
CDX95314
CDY06478
CDY23174

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28450.1	CDX73678	AT3G51920.1	17360592
AT3G28450.1	CDX95314	AT3G51920.1	17360592
AT3G28450.1	CDY23174	AT3G51920.1	17360592
AT3G28450.1	CDY06478	AT4G14640.1	17360592
AT3G28450.1	CDX92401	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47244	Canola	plasma membrane	95.68	95.84
CDX85198	Canola	golgi, plasma membrane	52.49	83.16
AT3G28450.1	Thale cress	plasma membrane	83.06	82.64
CDX86433	Canola	plasma membrane	76.41	82.14
Solyc02g067560.1.1	Tomato	golgi, plasma membrane, vacuole	61.63	61.53
VIT_14s0066g02250.t01	Wine grape	plasma membrane	62.62	61.5
PGSC0003DMT400017876	Potato	plasma membrane	62.46	61.44
Solyc02g087460.1.1	Tomato	plasma membrane	60.3	60.4
PGSC0003DMT400003278	Potato	plasma membrane	60.13	60.23
KRG93454	Soybean	mitochondrion	37.54	57.22
CDY16228	Canola	plasma membrane	56.64	56.93
CDY14686	Canola	plasma membrane	56.15	56.62
CDY38780	Canola	plasma membrane	52.99	53.17
CDY11627	Canola	plasma membrane	52.33	52.94
KRH18545	Soybean	plasma membrane	25.08	51.36
CDX85197	Canola	plastid	18.77	50.9
KRH18546	Soybean	extracellular	18.44	47.44
CDX86309	Canola	golgi, mitochondrion, plasma membrane, plastid	34.55	44.44
CDX85334	Canola	plasma membrane	45.02	43.5
CDY48749	Canola	plasma membrane	44.19	42.7
CDY05685	Canola	plasma membrane	44.19	42.56
Zm00001d016331_P001	Maize	vacuole	14.78	39.73
CDY38095	Canola	plasma membrane	16.94	38.49
CDY38092	Canola	plasma membrane	17.11	38.43
CDX85492	Canola	plasma membrane	17.11	38.43
CDX69430	Canola	extracellular	14.62	36.82
CDY16992	Canola	cytosol, plasma membrane, plastid	11.3	33.83
CDY07991	Canola	plasma membrane	14.45	33.59
CDX81298	Canola	extracellular, plasma membrane	13.46	33.33
CDY05959	Canola	extracellular, plasma membrane	15.12	32.97
CDY18672	Canola	mitochondrion, plasma membrane	13.12	32.51
Zm00001d021202_P030	Maize	plastid	24.42	32.24
Zm00001d006033_P032	Maize	plastid	29.57	28.34
CDX70708	Canola	extracellular, plasma membrane, vacuole	16.45	27.65

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.10.1	Gene3D:3.30.200.20	Gene3D:3.80.10.10	GO:A0A078EPZ8	EnsemblPlants:CDY04020
ProteinID:CDY04020	ProteinID:CDY04020.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00117587001	InterPro:IPR000719
InterPro:IPR032675	InterPro:Kinase-like_dom_sf	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf	PFAM:PF07714	PFAM:PF08263
PRINTS:PR00019	PFscan:PS50011	PANTHER:PTHR44101	PANTHER:PTHR44101:SF2	InterPro:Prot_kinase_dom	SUPFAM:SSF52058
SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0004EE2CD9	SEG:seg

Description

BnaC02g37350D

Coordinates

chrLK031948:+:460207..462268

Molecular Weight (calculated)

66447.2 Da

IEP (calculated)

5.598

GRAVY (calculated)

-0.021

Length

602 amino acids

Sequence
(BLAST)

001: MEKIIPNPIK LLPLSIFIIL LLCFSPPAMA ADEDDIKCLK GIQTSLTDPQ GILKSWNFAN TTLGFLCNFV GVSCWNNQEN RVINLELRDM GLSGRIPESL
101: QYCGSLQKLD LSTNRLSGNI PRELCTWLPF LVSLDLSNNQ LNGEIPPSLA ECRFVNSLVL SENRLTGQIP VQLSSLGRLA TFSVSNNDLT GRIPSFFASS
201: AKYSSDDFAG NKGLCGRPLS STCGGLSKKN LAIIVAAGVI GAAASMLLAF GVWWYYYGTR KRRTLNEEGV STLAQRLISH KLVQVSLFQK PLVKVKLGDL
301: MAATNGFSSE NVIVTTRTGT TYKAVLPDGS ALAVKHLSEC KLGEKEFRYE MNRLWELRHP NLAPLLGFCV VEEERLLVYK YMSNGTLMSL LEGDEELDWL
401: TRYRIGLGAA RGLAWLHHGC RPSILHQNIC SSVILVDEDF DARIVDSGLA RLMVPSDNNE SSFMTGDLGE FGYVAPEYST TMLASLKGDV YGLGVVLLEL
501: ATGVKALGKE GFKGSLVDWV KHLESSGRLA DAIDEEIRGK GCDEEIIKFV EVACNCVASR PKERWSMFKA YQSLRAMAEK QGYSFTEQDE DFPLIFNTQE
601: NE

Best Arabidopsis Sequence Match ( AT3G28450.1 )
(BLAST)

001: MKEIGSKPRK LLPLCFIIFL CFCSSVMAAD EDDIRCLRGL KASLTDPQNA LKSWNFDNTT LGFLCNFVGV SCWNNQENRV INLELRDMGL SGKIPDSLQY
101: CASLQKLDLS SNRLSGNIPT ELCNWLPFLV SLDLSNNELN GEIPPDLAKC SFVNSLVLSD NRLSGQIPVQ FSALGRLGRF SVANNDLSGR IPVFFSSPSY
201: SSDDFSGNKG LCGRPLSSSC GGLSKKNLGI IIAAGVFGAA ASMLLAFGIW WYYHLKWTRR RRSGLTEVGV SGLAQRLRSH KLTQVSLFQK PLVKVKLGDL
301: MAATNNFNSE NIIVSTRTGT TYKALLPDGS ALAVKHLSTC KLGEREFRYE MNQLWELRHS NLAPLLGFCV VEEEKFLVYK YMSNGTLHSL LDSNRGELDW
401: STRFRIGLGA ARGLAWLHHG CRPPILHQNI CSSVILIDED FDARIIDSGL ARLMVPSDNN ESSFMTGDLG EFGYVAPEYS TTMLASLKGD VYGLGVVLLE
501: LATGLKAVGG EGFKGSLVDW VKQLESSGRI AETFDENIRG KGHDEEISKF VEIALNCVSS RPKERWSMFQ AYQSLKAIAE KQGYSFSEQD DDFPLIFDTQ
601: ENEKV

Arabidopsis Description

BIR2Inactive LRR receptor-like serine/threonine-protein kinase BIR2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSI9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.