Factsheet for VIT_14s0066g02250.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 7
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g04420.t01
VIT_06s0009g01910.t01
VIT_08s0040g00470.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28450.1	VIT_06s0009g01910.t01	AT2G41090.1	17360592
AT3G28450.1	VIT_08s0040g00470.t01	AT2G41090.1	17360592
AT3G28450.1	VIT_06s0009g01910.t01	AT2G41100.1	17360592
AT3G28450.1	VIT_08s0040g00470.t01	AT2G41100.1	17360592
AT3G28450.1	VIT_05s0020g04420.t01	AT4G14640.1	17360592
AT3G28450.1	VIT_06s0009g01910.t01	AT5G21274.1	17360592
AT3G28450.1	VIT_08s0040g00470.t01	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400017876	Potato	plasma membrane	67.37	67.48
Solyc02g087460.1.1	Tomato	plasma membrane	65.91	67.22
Solyc02g067560.1.1	Tomato	golgi, plasma membrane, vacuole	66.07	67.16
PGSC0003DMT400003278	Potato	plasma membrane	65.58	66.89
VIT_01s0026g01060.t01	Wine grape	plasma membrane	66.56	66.78
Bra033046.1-P	Field mustard	cytosol	60.69	64.81
CDX85198	Canola	golgi, plasma membrane	39.97	64.47
AT3G28450.1	Thale cress	plasma membrane	62.48	63.31
CDY04020	Canola	plasma membrane	61.5	62.62
Bra025334.1-P	Field mustard	plasma membrane	60.2	62.12
CDY47244	Canola	plasma membrane	60.52	61.73
CDX86433	Canola	plasma membrane	55.46	60.71
KRG93454	Soybean	mitochondrion	38.83	60.25
KRH18545	Soybean	plasma membrane	26.43	55.1
KRH18546	Soybean	extracellular	18.76	49.15
VIT_00s2085g00010.t01	Wine grape	plasma membrane	44.7	44.26
VIT_00s0220g00120.t01	Wine grape	plasma membrane	44.54	43.96
Zm00001d016331_P001	Maize	vacuole	15.17	41.52
CDX85197	Canola	plastid	14.68	40.54
VIT_07s0151g00470.t01	Wine grape	plasma membrane	15.82	35.93
VIT_05s0094g01270.t01	Wine grape	cytosol	19.58	35.71
Zm00001d021202_P030	Maize	plastid	24.8	33.33
VIT_05s0094g01290.t01	Wine grape	mitochondrion	6.53	31.25
Zm00001d006033_P032	Maize	plastid	31.48	30.73
VIT_16s0039g01990.t01	Wine grape	cytosol	9.62	18.32

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100853588	wikigene:100853588	MapMan:18.4.1.10.1	Gene3D:3.30.200.20	Gene3D:3.80.10.10
ProteinID:CCB58575	ProteinID:CCB58575.1	UniProt:F6HV57	EMBL:FN596252	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	InterPro:IPR001611
InterPro:IPR032675	InterPro:Kinase-like_dom_sf	EntrezGene:LOC100853588	wikigene:LOC100853588	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt	PFAM:PF00069	PFAM:PF00560	PFAM:PF08263	PFscan:PS50011	PANTHER:PTHR44101
PANTHER:PTHR44101:SF2	InterPro:Prot_kinase_dom	SUPFAM:SSF52058	SUPFAM:SSF56112	SignalP:SignalP-TM	TIGR:TC62771
TIGR:TC64756	TMHMM:TMhelix	UniParc:UPI00015C98B6	ArrayExpress:VIT_14s0066g02250	EnsemblPlantsGene:VIT_14s0066g02250	EnsemblPlants:VIT_14s0066g02250.t01
unigene:Vvi.1655	RefSeq:XP_003633815	RefSeq:XP_003633815.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr14:-:28466334..28468513

Molecular Weight (calculated)

67204.9 Da

IEP (calculated)

7.582

GRAVY (calculated)

-0.073

Length

613 amino acids

Sequence
(BLAST)

001: MKLSEDLRGH IQGCSLVLLT IVILCCVALF SAAVAEDDVK CLRGVKESLS DPQGKLSSWS FSNISVGSLC KFVGVACWND RENRIFGLEL PDMKLSGEIP
101: KPLEYCQSMQ TLDLSGNRLY GNIPSQICTW LPYLVTLDLS NNDLSGTIPP DLANCSFLNS LLLADNQLSG IIPSQLSSLG RLKKFSVANN RLTGTIPSAF
201: GKFDKAGFDG NSGLCGRPLG SKCGGLNKKS LAIIIAAGVF GAAASLLLGF GLWWWFFARL RGQRKRRYGI GRDDHSSWTE RLRAHKLVQV TLFQKPIVKV
301: KLADLMAATN NFHPENIINS TRTGTSYKAI LPDGSALAIK RLNTCNLGEK QFRSEMNRLG QFRHPNLAPL LGFCAVEEEK LLVYKYMSNG TLYSLLHGNG
401: TPMDWATRFR IGLGAARGLA WLHHGCQPPL LHENISSNVI LIDDDFDARI VDFGLARLMA TSDSNGSSFV NGGLGEFGYV APEYSSTMVA SLKGDVYGFG
501: VVLLELVTGQ KPLEVTNAEE GFKGNLVEWV NQLCGSGRNK DVIDEALCGK GHDEEILQFL KIACNCLGPR PKDRLSMYQA FESLKSMGDH HGFSEHYDEF
601: PLIFGKQDHD NQA

Best Arabidopsis Sequence Match ( AT1G27190.1 )
(BLAST)

001: MKKIFITLLW LLFISSFLCS SSSAEDDVLC LQGLKNSLID PSSRLSSWSF PNSSASSICK LTGVSCWNEK ENRIISLQLQ SMQLAGEIPE SLKLCRSLQS
101: LDLSGNDLSG SIPSQICSWL PYLVTLDLSG NKLGGSIPTQ IVECKFLNAL ILSDNKLSGS IPSQLSRLDR LRRLSLAGND LSGTIPSELA RFGGDDFSGN
201: NGLCGKPLSR CGALNGRNLS IIIVAGVLGA VGSLCVGLVI FWWFFIREGS RKKKGYGAGK SKDDSDWIGL LRSHKLVQVT LFQKPIVKIK LGDLMAATNN
301: FSSGNIDVSS RTGVSYKADL PDGSALAVKR LSACGFGEKQ FRSEMNKLGE LRHPNLVPLL GYCVVEDERL LVYKHMVNGT LFSQLHNGGL CDAVLDWPTR
401: RAIGVGAAKG LAWLHHGCQP PYLHQFISSN VILLDDDFDA RITDYGLAKL VGSRDSNDSS FNNGDLGELG YVAPEYSSTM VASLKGDVYG FGIVLLELVT
501: GQKPLSVING VEGFKGSLVD WVSQYLGTGR SKDAIDRSIC DKGHDEEILQ FLKIACSCVV SRPKERPTMI QVYESLKNMA DKHGVSEHYD EFPLVFNKQE
601: A

Arabidopsis Description

Probable inactive receptor kinase At1g27190 [Source:UniProtKB/Swiss-Prot;Acc:O04567]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.