CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG94975
KRH18664
KRH31638
KRH69070

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28450.1	KRG89812	AT2G41090.1	17360592
AT3G28450.1	KRG94975	AT2G41090.1	17360592
AT3G28450.1	KRH18664	AT2G41090.1	17360592
AT3G28450.1	KRG89812	AT2G41100.1	17360592
AT3G28450.1	KRG94975	AT2G41100.1	17360592
AT3G28450.1	KRH18664	AT2G41100.1	17360592
AT3G28450.1	KRH31638	AT4G14640.1	17360592
AT3G28450.1	KRH69070	AT4G14640.1	17360592
AT3G28450.1	KRG89812	AT5G21274.1	17360592
AT3G28450.1	KRG94975	AT5G21274.1	17360592
AT3G28450.1	KRH18664	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH18545	Soybean	plasma membrane	64.05	86.05
KRH18546	Soybean	extracellular	40.76	68.8
VIT_14s0066g02250.t01	Wine grape	plasma membrane	60.25	38.83
CDX86433	Canola	plasma membrane	54.68	38.57
KRH66279	Soybean	cytosol	17.47	37.7
Bra033046.1-P	Field mustard	cytosol	54.68	37.63
CDY04020	Canola	plasma membrane	57.22	37.54
AT3G28450.1	Thale cress	plasma membrane	57.47	37.52
CDY47244	Canola	plasma membrane	55.7	36.61
Bra025334.1-P	Field mustard	plasma membrane	54.68	36.36
Solyc02g067560.1.1	Tomato	golgi, plasma membrane, vacuole	54.94	35.99
PGSC0003DMT400017876	Potato	plasma membrane	55.44	35.78
PGSC0003DMT400003278	Potato	plasma membrane	54.18	35.61
Solyc02g087460.1.1	Tomato	plasma membrane	53.92	35.44
CDX85197	Canola	plastid	19.24	34.23
KRH77166	Soybean	plasma membrane	21.27	31.34
KRH28321	Soybean	extracellular, plasma membrane	21.27	31.23
KRH21657	Soybean	cytosol	32.91	30.73
CDX85198	Canola	golgi, plasma membrane	25.57	26.58
KRH07291	Soybean	plasma membrane	41.27	26.55
KRH40243	Soybean	plasma membrane	41.01	26.26
KRH00983	Soybean	nucleus, plasma membrane	40.25	25.73
KRH42002	Soybean	plasma membrane	35.95	22.5
KRH66278	Soybean	cytosol	25.57	22.0
KRH41999	Soybean	cytosol, golgi, plasma membrane	34.18	21.95
KRH66274	Soybean	plasma membrane	23.8	20.84
KRH66277	Soybean	plasma membrane	23.8	20.84
KRH21659	Soybean	cytosol	10.89	18.22
KRH37646	Soybean	cytosol	10.63	17.21
KRG88547	Soybean	cytosol	11.9	14.46
Zm00001d006033_P032	Maize	plastid	21.27	13.38
KRH42000	Soybean	vacuole	11.39	11.66
KRH49900	Soybean	cytosol	6.84	10.59
Zm00001d021202_P030	Maize	plastid	11.9	10.31
Zm00001d016331_P001	Maize	vacuole	5.57	9.82
KRH66275	Soybean	mitochondrion, plasma membrane	4.05	6.43
KRH21660	Soybean	cytosol	0.51	1.26

Protein Annotations

Gene3D:3.30.200.20	Gene3D:3.80.10.10	MapMan:35.1	UniProt:A0A0R0ETU4	EMBL:ACUP02011561	EnsemblPlantsGene:GLYMA_19G017300
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538
InterPro:IPR001611	InterPro:IPR032675	EnsemblPlants:KRG93454	ProteinID:KRG93454	ProteinID:KRG93454.1	InterPro:Kinase-like_dom_sf
InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	PFAM:PF08263	PFAM:PF13855	PANTHER:PTHR44101
PANTHER:PTHR44101:SF2	SUPFAM:SSF52058	SUPFAM:SSF56112	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0006ED6699
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:1814297..1816879

Molecular Weight (calculated)

42748.5 Da

IEP (calculated)

8.087

GRAVY (calculated)

0.071

Length

395 amino acids

Sequence
(BLAST)

001: MDRSNTFSSS LLLLSLLGFH LFFVSSQVED DVTCLKGIKE TLSDPLNRLS NWRFDNTTVG FICDFVGVSC WNQRENRVIG LDLQDFKLSG KIPEALKYCG
101: NSIQRLDLAS NSFSSEIPHE ICTWMPFLVS IDLSSNQLSG VIPPTIDNCS YLNELVLSNN QLSGSIPFEF GNLGRLKKFS VANNRLTGTI PAFFNGFDRE
201: GFEGNSGLCG GPLGGKCGGI SKKNLAIIIA AGVFGAAASL LLAFGLWWWY HLSGKNKKKG YGVGSGGVGG GGGGDWAMRL RGYKLVQVSL FQKPIVKLKL
301: GDLMAATSNF SEENVLFTTR TGATYKADLP DGSALAVKRL SVCRIGEKQF GMEMNRLGQV RHPNLAPLLG YCVVEGGEAV GLQAHVEWDA VFVVA

Best Arabidopsis Sequence Match ( AT3G28450.1 )
(BLAST)

001: MKEIGSKPRK LLPLCFIIFL CFCSSVMAAD EDDIRCLRGL KASLTDPQNA LKSWNFDNTT LGFLCNFVGV SCWNNQENRV INLELRDMGL SGKIPDSLQY
101: CASLQKLDLS SNRLSGNIPT ELCNWLPFLV SLDLSNNELN GEIPPDLAKC SFVNSLVLSD NRLSGQIPVQ FSALGRLGRF SVANNDLSGR IPVFFSSPSY
201: SSDDFSGNKG LCGRPLSSSC GGLSKKNLGI IIAAGVFGAA ASMLLAFGIW WYYHLKWTRR RRSGLTEVGV SGLAQRLRSH KLTQVSLFQK PLVKVKLGDL
301: MAATNNFNSE NIIVSTRTGT TYKALLPDGS ALAVKHLSTC KLGEREFRYE MNQLWELRHS NLAPLLGFCV VEEEKFLVYK YMSNGTLHSL LDSNRGELDW
401: STRFRIGLGA ARGLAWLHHG CRPPILHQNI CSSVILIDED FDARIIDSGL ARLMVPSDNN ESSFMTGDLG EFGYVAPEYS TTMLASLKGD VYGLGVVLLE
501: LATGLKAVGG EGFKGSLVDW VKQLESSGRI AETFDENIRG KGHDEEISKF VEIALNCVSS RPKERWSMFQ AYQSLKAIAE KQGYSFSEQD DDFPLIFDTQ
601: ENEKV

Arabidopsis Description

BIR2Inactive LRR receptor-like serine/threonine-protein kinase BIR2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSI9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.