CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 6
extracellular 3
endoplasmic reticulum 3
vacuole 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73678
CDX92401
CDX95314
CDY06478
CDY23174

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28450.1	CDX73678	AT3G51920.1	17360592
AT3G28450.1	CDX95314	AT3G51920.1	17360592
AT3G28450.1	CDY23174	AT3G51920.1	17360592
AT3G28450.1	CDY06478	AT4G14640.1	17360592
AT3G28450.1	CDX92401	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025334.1-P	Field mustard	plasma membrane	100.0	94.28
CDX85198	Canola	golgi, plasma membrane	57.5	84.74
CDY04020	Canola	plasma membrane	82.14	76.41
AT3G28450.1	Thale cress	plasma membrane	81.43	75.37
CDY47244	Canola	plasma membrane	79.82	74.38
Solyc02g067560.1.1	Tomato	golgi, plasma membrane, vacuole	59.82	55.56
VIT_14s0066g02250.t01	Wine grape	plasma membrane	60.71	55.46
PGSC0003DMT400017876	Potato	plasma membrane	60.0	54.9
KRG93454	Soybean	mitochondrion	38.57	54.68
CDX85197	Canola	plastid	21.25	53.6
Solyc02g087460.1.1	Tomato	plasma membrane	57.5	53.58
PGSC0003DMT400003278	Potato	plasma membrane	57.14	53.24
CDY16228	Canola	plasma membrane	55.0	51.42
KRH18545	Soybean	plasma membrane	26.96	51.36
CDY14686	Canola	plasma membrane	54.64	51.26
CDY11627	Canola	plasma membrane	48.93	46.05
CDY38780	Canola	plasma membrane	49.29	46.0
KRH18546	Soybean	extracellular	19.11	45.73
CDY38095	Canola	plasma membrane	18.57	39.25
CDX85492	Canola	plasma membrane	18.75	39.18
CDY38092	Canola	plasma membrane	18.57	38.81
CDX85334	Canola	plasma membrane	42.5	38.2
CDX86309	Canola	golgi, mitochondrion, plasma membrane, plastid	31.25	37.39
CDY48749	Canola	plasma membrane	41.07	36.92
CDY05685	Canola	plasma membrane	41.07	36.8
CDX69430	Canola	extracellular	15.36	35.98
CDY16992	Canola	cytosol, plasma membrane, plastid	12.5	34.83
CDY07991	Canola	plasma membrane	15.89	34.36
CDY05959	Canola	extracellular, plasma membrane	16.25	32.97
CDX81298	Canola	extracellular, plasma membrane	14.29	32.92
CDY18672	Canola	mitochondrion, plasma membrane	14.11	32.51
Zm00001d016331_P001	Maize	vacuole	12.32	30.8
Zm00001d021202_P030	Maize	plastid	22.5	27.63
CDX70708	Canola	extracellular, plasma membrane, vacuole	16.96	26.54
Zm00001d006033_P032	Maize	plastid	27.68	24.68

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.10.1	Gene3D:3.30.200.20	Gene3D:3.80.10.10	GO:A0A078DGH0	EnsemblPlants:CDX86433
ProteinID:CDX86433	ProteinID:CDX86433.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0004713	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00144576001	InterPro:IPR000719	InterPro:IPR001611	InterPro:IPR032675	InterPro:Kinase-like_dom_sf	InterPro:LRR_N_plant-typ
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	PFAM:PF00560	PFAM:PF07714	PFAM:PF08263	PRINTS:PR00019
PFscan:PS50011	PANTHER:PTHR44101	PANTHER:PTHR44101:SF2	InterPro:Prot_kinase_dom	SMART:SM00219	SUPFAM:SSF52058
SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	SignalP:SignalP-noTM	TMHMM:TMhelix	InterPro:Tyr_kinase_cat_dom	UniParc:UPI0004EE8344
SEG:seg	:	:	:	:	:

Description

BnaA06g31500D

Coordinates

chrLK031845:-:1540185..1542379

Molecular Weight (calculated)

62121.7 Da

IEP (calculated)

7.037

GRAVY (calculated)

-0.107

Length

560 amino acids

Sequence
(BLAST)

001: MEISSKPRKL LPFFIFFLCY SSPALAADED DIRCLRGIHT SLTDPNGLLK SWNFANTTVG FLCNFVGVSC WNNQENRVLN LELRDMSLSG QIPDSLRFCG
101: SLQKLDLSNN RLTGTIPRQL CSWLPFLVSL DLSNNQLNGE IPPELAECRF VNSLVLSDNR LSGLIPVQLS SLGRLVTFSV SNNHLTGRIP SFFTSPSYSP
201: DDFNGNKGLC GRPLSSPCGG LSKKNLAIII AAGVFGAAAS ILLAFVVYLK RRTTTSSLTE GGLAQRLRIH KLVQVSLFQK PLVKVKLGDL MSATNHFSSE
301: NIIVKTRTGT TYKAVLPDGS ALAVKHLSKC KLEEREFGYE MNRLWELRHP NLAPLLGFCA VEEERFLVYK YMSNGTLRSL LEEEEDVELD WSTRFRIGLG
401: AARGLAWLHH GCRPPILHQN VCSSVILIDE DFDARLVDSG LARLMVRSDN NEGSFMTGGL GLKALGGGEG FKGSLVDWVK QLESSGRMAD ALDEGIRGKG
501: HDEEILKFVE VACHCVATNP KERWTMFQAY RSLKAMAEKQ GYSFTEQDDD FPLIFDTQEN

Best Arabidopsis Sequence Match ( AT3G28450.1 )
(BLAST)

001: MKEIGSKPRK LLPLCFIIFL CFCSSVMAAD EDDIRCLRGL KASLTDPQNA LKSWNFDNTT LGFLCNFVGV SCWNNQENRV INLELRDMGL SGKIPDSLQY
101: CASLQKLDLS SNRLSGNIPT ELCNWLPFLV SLDLSNNELN GEIPPDLAKC SFVNSLVLSD NRLSGQIPVQ FSALGRLGRF SVANNDLSGR IPVFFSSPSY
201: SSDDFSGNKG LCGRPLSSSC GGLSKKNLGI IIAAGVFGAA ASMLLAFGIW WYYHLKWTRR RRSGLTEVGV SGLAQRLRSH KLTQVSLFQK PLVKVKLGDL
301: MAATNNFNSE NIIVSTRTGT TYKALLPDGS ALAVKHLSTC KLGEREFRYE MNQLWELRHS NLAPLLGFCV VEEEKFLVYK YMSNGTLHSL LDSNRGELDW
401: STRFRIGLGA ARGLAWLHHG CRPPILHQNI CSSVILIDED FDARIIDSGL ARLMVPSDNN ESSFMTGDLG EFGYVAPEYS TTMLASLKGD VYGLGVVLLE
501: LATGLKAVGG EGFKGSLVDW VKQLESSGRI AETFDENIRG KGHDEEISKF VEIALNCVSS RPKERWSMFQ AYQSLKAIAE KQGYSFSEQD DDFPLIFDTQ
601: ENEKV

Arabidopsis Description

BIR2Inactive LRR receptor-like serine/threonine-protein kinase BIR2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSI9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.