CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 3
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 6
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73678
CDX92401
CDX95314
CDY23174

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27190.1	CDX73678	AT3G51920.1	17360592
AT1G27190.1	CDX95314	AT3G51920.1	17360592
AT1G27190.1	CDY23174	AT3G51920.1	17360592
AT1G27190.1	CDX92401	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16228	Canola	plasma membrane	98.49	98.16
Bra024650.1-P	Field mustard	plasma membrane	98.33	98.16
AT1G27190.1	Thale cress	plasma membrane	92.46	91.85
CDY11627	Canola	plasma membrane	72.53	72.77
CDY38780	Canola	plasma membrane	73.03	72.67
VIT_01s0026g01060.t01	Wine grape	plasma membrane	66.0	64.48
PGSC0003DMT400058291	Potato	plasma membrane	61.98	60.16
Solyc05g006570.1.1	Tomato	plasma membrane	61.31	60.0
CDX85198	Canola	golgi, plasma membrane	37.86	59.47
CDY04020	Canola	plasma membrane	56.62	56.15
CDY47244	Canola	plasma membrane	55.78	55.41
CDX86433	Canola	plasma membrane	51.26	54.64
Zm00001d016331_P001	Maize	vacuole	17.25	45.98
CDX86309	Canola	golgi, mitochondrion, plasma membrane, plastid	34.67	44.23
CDX85334	Canola	plasma membrane	45.56	43.66
CDY48749	Canola	plasma membrane	44.56	42.7
CDY05685	Canola	plasma membrane	44.22	42.24
CDX85197	Canola	plastid	13.74	36.94
CDY38095	Canola	plasma membrane	16.08	36.23
CDX69430	Canola	extracellular	14.24	35.56
CDX85492	Canola	plasma membrane	15.91	35.45
CDY38092	Canola	plasma membrane	15.91	35.45
Zm00001d021202_P030	Maize	plastid	26.97	35.31
CDY05959	Canola	extracellular, plasma membrane	16.25	35.14
CDY07991	Canola	plasma membrane	14.91	34.36
CDX81298	Canola	extracellular, plasma membrane	13.57	33.33
CDY16992	Canola	cytosol, plasma membrane, plastid	11.06	32.84
CDY18672	Canola	mitochondrion, plasma membrane	13.23	32.51
Zm00001d006033_P032	Maize	plastid	32.66	31.05
CDX70708	Canola	extracellular, plasma membrane, vacuole	15.41	25.7

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.10.1	Gene3D:3.30.200.20	Gene3D:3.80.10.10	GO:A0A078FNI3	UniProt:A0A078FNI3
EnsemblPlants:CDY14686	ProteinID:CDY14686	ProteinID:CDY14686.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0006464
GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00084479001	InterPro:IPR000719	InterPro:IPR001611
InterPro:IPR032675	InterPro:Kinase-like_dom_sf	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	PFAM:PF07714
PFAM:PF08263	PFAM:PF13516	PFAM:PF13855	PRINTS:PR00019	PFscan:PS50011	PANTHER:PTHR44101
PANTHER:PTHR44101:SF4	InterPro:Prot_kinase_dom	SUPFAM:SSF52058	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	SignalP:SignalP-noTM
TMHMM:TMhelix	UniParc:UPI0004EBB173	SEG:seg	:	:	:

Description

BnaC05g19430DBnaC05g19430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FNI3]

Coordinates

chrLK032046:+:262559..264566

Molecular Weight (calculated)

64858.9 Da

IEP (calculated)

6.994

GRAVY (calculated)

-0.038

Length

597 amino acids

Sequence
(BLAST)

001: MKTLLWLLFI SSFLSSFAED DVLCLQGLKK SLTDPSSRLT SWSFPNSSAS SICKLTGVSC WNEKENRIIS LQLQSMQLAG QIPESLKLCR SLQSLDLSGN
101: DLSGAIPSQI CSWLPYLVTL DLSGNKLSGP IPTQIVECKF LNALVLSDNK LSGSVPTELS RLDRLRRLSL AGNELSGTIP SELSRFGEVD FSDNNGLCGK
201: PLSGCGALSG RNLTIIVVAG VLGAVGSLCV GLAVFWWFFM REGSGRKKRG GYGAGKSRDD SDWIGLFRSH KLVQVTLFQK PIVKIKLNDL MAATNEFSSG
301: NIDVSSRTGV SYKADLPDGS ALAVKRLSAC GVGEKQFKSE MSKLGELRHP NLVPLLGYCV VEDERLLVYK HMPNGTLFSQ LHSGGLCDAG LDWPTRLTIG
401: VGAARGLAWL HHGCQPPYLH QFISSNVILL DDDFDARITD YGLAKLVGTR DSNDSSFNNG DLGELGYVAP EYSSTMVASL KGDVYGFGIV LLELVTGQKP
501: LSVINGVEGF KGSLVDWVSQ YLGTGRSKDA IDRSISGKGH DEEILQFLKI ACSCVVSRPK ERPTMVQVYE SLKNMADKHG VSEHYDEFPL VFNKQEA

Best Arabidopsis Sequence Match ( AT1G27190.1 )
(BLAST)

001: MKKIFITLLW LLFISSFLCS SSSAEDDVLC LQGLKNSLID PSSRLSSWSF PNSSASSICK LTGVSCWNEK ENRIISLQLQ SMQLAGEIPE SLKLCRSLQS
101: LDLSGNDLSG SIPSQICSWL PYLVTLDLSG NKLGGSIPTQ IVECKFLNAL ILSDNKLSGS IPSQLSRLDR LRRLSLAGND LSGTIPSELA RFGGDDFSGN
201: NGLCGKPLSR CGALNGRNLS IIIVAGVLGA VGSLCVGLVI FWWFFIREGS RKKKGYGAGK SKDDSDWIGL LRSHKLVQVT LFQKPIVKIK LGDLMAATNN
301: FSSGNIDVSS RTGVSYKADL PDGSALAVKR LSACGFGEKQ FRSEMNKLGE LRHPNLVPLL GYCVVEDERL LVYKHMVNGT LFSQLHNGGL CDAVLDWPTR
401: RAIGVGAAKG LAWLHHGCQP PYLHQFISSN VILLDDDFDA RITDYGLAKL VGSRDSNDSS FNNGDLGELG YVAPEYSSTM VASLKGDVYG FGIVLLELVT
501: GQKPLSVING VEGFKGSLVD WVSQYLGTGR SKDAIDRSIC DKGHDEEILQ FLKIACSCVV SRPKERPTMI QVYESLKNMA DKHGVSEHYD EFPLVFNKQE
601: A

Arabidopsis Description

Probable inactive receptor kinase At1g27190 [Source:UniProtKB/Swiss-Prot;Acc:O04567]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.