Subcellular Localization
min:
: max
Winner_takes_all: extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 3
- golgi 2
- plasma membrane 3
- endoplasmic reticulum 2
- vacuole 2
- mitochondrion 3
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G49750.1 | Thale cress | extracellular, plasma membrane | 89.13 | 89.78 |
| CDX81298 | Canola | extracellular, plasma membrane | 66.3 | 75.31 |
| CDY18672 | Canola | mitochondrion, plasma membrane | 66.3 | 75.31 |
| VIT_07s0151g00470.t01 | Wine grape | plasma membrane | 71.38 | 72.96 |
| PGSC0003DMT400093490 | Potato | extracellular | 68.84 | 71.16 |
| Solyc02g092040.1.1 | Tomato | extracellular | 68.12 | 70.41 |
| KRH77166 | Soybean | plasma membrane | 65.22 | 67.16 |
| KRH28321 | Soybean | extracellular, plasma membrane | 65.22 | 66.91 |
| GSMUA_Achr2P08610_001 | Banana | plasma membrane | 65.58 | 64.64 |
| GSMUA_Achr3P25790_001 | Banana | extracellular, plasma membrane, vacuole | 64.49 | 63.35 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 62.68 | 62.91 |
| GSMUA_Achr7P27510_001 | Banana | extracellular, plasma membrane | 56.16 | 61.51 |
| Zm00001d052058_P001 | Maize | extracellular, plasma membrane | 62.32 | 61.43 |
| GSMUA_Achr3P30680_001 | Banana | extracellular, plasma membrane | 63.77 | 61.32 |
| EES07661 | Sorghum | extracellular, plasma membrane | 63.04 | 61.05 |
| Zm00001d018344_P001 | Maize | extracellular, plasma membrane | 62.32 | 60.99 |
| TraesCS5B01G161200.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 62.32 | 60.56 |
| TraesCS5D01G168900.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 62.32 | 59.93 |
| TraesCS5A01G163900.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 61.96 | 59.58 |
| HORVU0Hr1G012140.1 | Barley | endoplasmic reticulum, extracellular, plasma membrane | 61.96 | 59.58 |
| Os09t0131200-01 | Rice | plasma membrane | 60.51 | 59.22 |
| GSMUA_Achr1P14260_001 | Banana | plastid | 64.13 | 58.22 |
| CDX85197 | Canola | plastid | 24.64 | 30.63 |
| CDY07991 | Canola | plasma membrane | 25.36 | 27.03 |
| CDY38095 | Canola | plasma membrane | 25.36 | 26.42 |
| CDY38092 | Canola | plasma membrane | 25.0 | 25.75 |
| CDX85492 | Canola | plasma membrane | 25.0 | 25.75 |
| CDX69430 | Canola | extracellular | 21.74 | 25.1 |
| CDY16992 | Canola | cytosol, plasma membrane, plastid | 16.3 | 22.39 |
| CDX70708 | Canola | extracellular, plasma membrane, vacuole | 26.45 | 20.39 |
| CDY11627 | Canola | plasma membrane | 36.59 | 16.97 |
| CDY38780 | Canola | plasma membrane | 36.23 | 16.67 |
| CDY16228 | Canola | plasma membrane | 35.51 | 16.36 |
| CDX86433 | Canola | plasma membrane | 32.97 | 16.25 |
| CDY14686 | Canola | plasma membrane | 35.14 | 16.25 |
| CDY04020 | Canola | plasma membrane | 32.97 | 15.12 |
| CDY47244 | Canola | plasma membrane | 32.25 | 14.81 |
| CDX85334 | Canola | plasma membrane | 30.43 | 13.48 |
| CDY48749 | Canola | plasma membrane | 28.99 | 12.84 |
| CDY05685 | Canola | plasma membrane | 28.62 | 12.64 |
| CDX86309 | Canola | golgi, mitochondrion, plasma membrane, plastid | 14.13 | 8.33 |
| CDX85198 | Canola | golgi, plasma membrane | 4.35 | 3.16 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | GO:A0A078EZA7 | EnsemblPlants:CDY05959 | ProteinID:CDY05959 | ProteinID:CDY05959.1 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 |
| GO:GO:0016020 | EnsemblPlantsGene:GSBRNA2T00121787001 | InterPro:IPR001611 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt |
| InterPro:Leu-rich_rpt_4 | PFAM:PF12799 | PRINTS:PR00019 | PFscan:PS51450 | PANTHER:PTHR44839 | SUPFAM:SSF52058 |
| SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0004EF3B2A | SEG:seg | : | : |
Description
BnaC08g21360D
Coordinates
chrLK031966:-:942897..943727
Molecular Weight (calculated)
30305.6 Da
IEP (calculated)
9.007
GRAVY (calculated)
-0.024
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MARNHRFRYR LLLLLIAFVT TRRLTSADPN DEACLKNLRQ NLEDPASNLR NWTSSVFSNP CSGFTSYLPG ATCNNGRIYK LSLTSLSLRG SISPFLSNCT
101: NLQSLDLSSN QISGEIPPDI QFLVNLAVLN LSSNRLSGEI PPQLALCAYL NVIDLHDNQL SGPIPQQLGL LARLSAFDVS NNKLSGQIPT YLSNRTGTFP
201: RFNASSFVGN RGLYGYPLQE MMKSKGLSVM AIVGIGLGSG VVSLMISFTG VCIWLRITER KMAEEEGKIS QSMPDY
101: NLQSLDLSSN QISGEIPPDI QFLVNLAVLN LSSNRLSGEI PPQLALCAYL NVIDLHDNQL SGPIPQQLGL LARLSAFDVS NNKLSGQIPT YLSNRTGTFP
201: RFNASSFVGN RGLYGYPLQE MMKSKGLSVM AIVGIGLGSG VVSLMISFTG VCIWLRITER KMAEEEGKIS QSMPDY
001: MTRSHRLLLL LLLIFQTAQR LTTADPNDEA CLKNLRQNLE DPASNLRNWT NSVFSNPCSG FTSYLPGATC NNGRIYKLSL TNLSLRGSIS PFLSNCTNLQ
101: SLDLSSNQIS GVIPPEIQYL VNLAVLNLSS NHLSGEITPQ LALCAYLNVI DLHDNELSGQ IPQQLGLLAR LSAFDVSNNK LSGQIPTYLS NRTGNFPRFN
201: ASSFIGNKGL YGYPLQEMMM KSKGLSVMAI VGIGLGSGIA SLMISFTGVC LWLRITEKKI VEEEGKISQS MPDY
101: SLDLSSNQIS GVIPPEIQYL VNLAVLNLSS NHLSGEITPQ LALCAYLNVI DLHDNELSGQ IPQQLGLLAR LSAFDVSNNK LSGQIPTYLS NRTGNFPRFN
201: ASSFIGNKGL YGYPLQEMMM KSKGLSVMAI VGIGLGSGIA SLMISFTGVC LWLRITEKKI VEEEGKISQS MPDY
Arabidopsis Description
AtRLP44RLP44 [Source:UniProtKB/TrEMBL;Acc:A0A178VI92]
SUBAcon: [extracellular,plasma membrane]
SUBAcon: [extracellular,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.