Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G168900.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 99.3 | 98.26 |
| HORVU0Hr1G012140.1 | Barley | endoplasmic reticulum, extracellular, plasma membrane | 99.3 | 98.26 |
| TraesCS5A01G163900.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 98.94 | 97.91 |
| EES07661 | Sorghum | extracellular, plasma membrane | 82.39 | 82.11 |
| Zm00001d018344_P001 | Maize | extracellular, plasma membrane | 81.34 | 81.91 |
| Zm00001d052058_P001 | Maize | extracellular, plasma membrane | 78.87 | 80.0 |
| Os09t0131200-01 | Rice | plasma membrane | 77.11 | 77.66 |
| Solyc02g092040.1.1 | Tomato | extracellular | 66.2 | 70.41 |
| PGSC0003DMT400093490 | Potato | extracellular | 65.85 | 70.04 |
| GSMUA_Achr2P08610_001 | Banana | plasma membrane | 69.01 | 70.0 |
| GSMUA_Achr3P25790_001 | Banana | extracellular, plasma membrane, vacuole | 68.31 | 69.04 |
| GSMUA_Achr7P27510_001 | Banana | extracellular, plasma membrane | 59.86 | 67.46 |
| GSMUA_Achr3P30680_001 | Banana | extracellular, plasma membrane | 67.96 | 67.25 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 64.79 | 66.91 |
| VIT_07s0151g00470.t01 | Wine grape | plasma membrane | 63.03 | 66.3 |
| KRH28321 | Soybean | extracellular, plasma membrane | 60.21 | 63.57 |
| CDY05959 | Canola | extracellular, plasma membrane | 60.56 | 62.32 |
| KRH77166 | Soybean | plasma membrane | 58.8 | 62.31 |
| GSMUA_Achr1P14260_001 | Banana | plastid | 66.2 | 61.84 |
| AT3G49750.1 | Thale cress | extracellular, plasma membrane | 59.51 | 61.68 |
| Bra029968.1-P | Field mustard | extracellular | 60.56 | 61.65 |
| Bra037831.1-P | Field mustard | extracellular, plasma membrane, vacuole | 59.15 | 61.54 |
| AT5G65830.1 | Thale cress | extracellular, plasma membrane | 59.15 | 60.22 |
| CDX81298 | Canola | extracellular, plasma membrane | 49.65 | 58.02 |
| CDY18672 | Canola | mitochondrion, plasma membrane | 49.3 | 57.61 |
| TraesCS2B01G364300.1 | Wheat | extracellular | 29.93 | 38.81 |
| TraesCS3B01G434100.1 | Wheat | plasma membrane | 32.39 | 34.07 |
| TraesCS3B01G434200.1 | Wheat | plasma membrane | 32.39 | 33.7 |
| TraesCS3B01G433700.1 | Wheat | plasma membrane | 30.63 | 32.95 |
| TraesCS3B01G434000.1 | Wheat | plasma membrane | 30.28 | 32.95 |
| TraesCS3B01G433800.1 | Wheat | extracellular | 25.35 | 32.0 |
| TraesCS3B01G433900.1 | Wheat | extracellular, mitochondrion, nucleus, plasma membrane | 28.17 | 25.89 |
| TraesCS1B01G269900.1 | Wheat | plasma membrane | 35.21 | 16.53 |
| TraesCS4B01G086300.1 | Wheat | plasma membrane | 34.15 | 16.01 |
| TraesCS2B01G364400.1 | Wheat | vacuole | 3.87 | 4.25 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G161200.1 | EnsemblPlantsGene:TraesCS5B01G161200 | Gene3D:3.80.10.10 | InterPro:IPR032675 | InterPro:LRR_dom_sf | PANTHER:PTHR44839 |
| PRINTS:PR00019 | SEG:seg | SignalP:SignalP-noTM | SUPFAM:SSF52058 | TMHMM:TMhelix | MapMan:35.1 |
Description
No Description!
Coordinates
chr5B:+:297105936..297106790
Molecular Weight (calculated)
29549.6 Da
IEP (calculated)
7.083
GRAVY (calculated)
0.317
Length
284 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQHHHFPPF AVAVAVAAVL VLLSPPSAAD PNDELCLSSL QQSLSLRNWT KSFFTDPCDG FISKLQGVTC NNGRVYKLSL PGLSLSGSIP PELSNCTNLQ
101: SLDLSSNALS GAIPTELSKL LNLAVLNLSA NALSGAIPRE LASCAYLNVI DLHGNQLSGP IPDELGLLVR LSTFDVSYNR LSGPIPVLLA NRSIAAGGGA
201: VAAGTTARFN ASSFAGNKDL YGYPLPPMRG HGLSVLAIVG IGLGSGLLSL VLSFSAVCIW LRSTDRTAAT PGEEGKISHL MPAY
101: SLDLSSNALS GAIPTELSKL LNLAVLNLSA NALSGAIPRE LASCAYLNVI DLHGNQLSGP IPDELGLLVR LSTFDVSYNR LSGPIPVLLA NRSIAAGGGA
201: VAAGTTARFN ASSFAGNKDL YGYPLPPMRG HGLSVLAIVG IGLGSGLLSL VLSFSAVCIW LRSTDRTAAT PGEEGKISHL MPAY
001: MTRSHRLLLL LLLIFQTAQR LTTADPNDEA CLKNLRQNLE DPASNLRNWT NSVFSNPCSG FTSYLPGATC NNGRIYKLSL TNLSLRGSIS PFLSNCTNLQ
101: SLDLSSNQIS GVIPPEIQYL VNLAVLNLSS NHLSGEITPQ LALCAYLNVI DLHDNELSGQ IPQQLGLLAR LSAFDVSNNK LSGQIPTYLS NRTGNFPRFN
201: ASSFIGNKGL YGYPLQEMMM KSKGLSVMAI VGIGLGSGIA SLMISFTGVC LWLRITEKKI VEEEGKISQS MPDY
101: SLDLSSNQIS GVIPPEIQYL VNLAVLNLSS NHLSGEITPQ LALCAYLNVI DLHDNELSGQ IPQQLGLLAR LSAFDVSNNK LSGQIPTYLS NRTGNFPRFN
201: ASSFIGNKGL YGYPLQEMMM KSKGLSVMAI VGIGLGSGIA SLMISFTGVC LWLRITEKKI VEEEGKISQS MPDY
Arabidopsis Description
AtRLP44RLP44 [Source:UniProtKB/TrEMBL;Acc:A0A178VI92]
SUBAcon: [plasma membrane,extracellular]
SUBAcon: [plasma membrane,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.