Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 7
- golgi 5
- plasma membrane 7
- endoplasmic reticulum 5
- vacuole 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g092040.1.1 | Tomato | extracellular | 78.52 | 79.4 |
| PGSC0003DMT400093490 | Potato | extracellular | 77.41 | 78.28 |
| KRH28321 | Soybean | extracellular, plasma membrane | 74.44 | 74.72 |
| KRH77166 | Soybean | plasma membrane | 73.7 | 74.25 |
| CDY05959 | Canola | extracellular, plasma membrane | 72.96 | 71.38 |
| AT3G49750.1 | Thale cress | extracellular, plasma membrane | 72.22 | 71.17 |
| Bra029968.1-P | Field mustard | extracellular | 72.22 | 69.89 |
| Bra037831.1-P | Field mustard | extracellular, plasma membrane, vacuole | 69.63 | 68.86 |
| AT5G65830.1 | Thale cress | extracellular, plasma membrane | 70.37 | 68.1 |
| GSMUA_Achr2P08610_001 | Banana | plasma membrane | 69.63 | 67.14 |
| CDX81298 | Canola | extracellular, plasma membrane | 58.89 | 65.43 |
| GSMUA_Achr3P25790_001 | Banana | extracellular, plasma membrane, vacuole | 67.78 | 65.12 |
| GSMUA_Achr7P27510_001 | Banana | extracellular, plasma membrane | 60.37 | 64.68 |
| CDY18672 | Canola | mitochondrion, plasma membrane | 58.15 | 64.61 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 65.19 | 64.0 |
| GSMUA_Achr3P30680_001 | Banana | extracellular, plasma membrane | 67.04 | 63.07 |
| TraesCS5B01G161200.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 66.3 | 63.03 |
| TraesCS5A01G163900.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 66.67 | 62.72 |
| GSMUA_Achr1P14260_001 | Banana | plastid | 70.37 | 62.5 |
| HORVU0Hr1G012140.1 | Barley | endoplasmic reticulum, extracellular, plasma membrane | 66.3 | 62.37 |
| TraesCS5D01G168900.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 66.3 | 62.37 |
| Zm00001d052058_P001 | Maize | extracellular, plasma membrane | 64.44 | 62.14 |
| EES07661 | Sorghum | extracellular, plasma membrane | 65.56 | 62.11 |
| Zm00001d018344_P001 | Maize | extracellular, plasma membrane | 64.44 | 61.7 |
| Os09t0131200-01 | Rice | plasma membrane | 62.22 | 59.57 |
| VIT_05s0094g01290.t01 | Wine grape | mitochondrion | 11.85 | 25.0 |
| VIT_14s0066g02250.t01 | Wine grape | plasma membrane | 35.93 | 15.82 |
| VIT_00s2085g00010.t01 | Wine grape | plasma membrane | 34.44 | 15.02 |
| VIT_01s0026g01060.t01 | Wine grape | plasma membrane | 33.7 | 14.89 |
| VIT_00s0220g00120.t01 | Wine grape | plasma membrane | 32.22 | 14.01 |
| VIT_05s0094g01270.t01 | Wine grape | cytosol | 5.93 | 4.76 |
| VIT_16s0039g01990.t01 | Wine grape | cytosol | 1.85 | 1.55 |
Protein Annotations
| EntrezGene:100268080 | wikigene:100268080 | Gene3D:3.80.10.10 | MapMan:35.1 | ProteinID:CCB62906 | ProteinID:CCB62906.1 |
| UniProt:F6I7I8 | EMBL:FN596793 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR001611 | InterPro:IPR032675 | EntrezGene:LOC100268080 | wikigene:LOC100268080 |
| InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | PFAM:PF00560 | PRINTS:PR00019 | PANTHER:PTHR44839 | SUPFAM:SSF52058 |
| SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI00015CE167 | ArrayExpress:VIT_07s0151g00470 | EnsemblPlantsGene:VIT_07s0151g00470 | EnsemblPlants:VIT_07s0151g00470.t01 |
| unigene:Vvi.15882 | RefSeq:XP_002265055 | RefSeq:XP_002265055.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr7_random:+:935037..936198
Molecular Weight (calculated)
29050.7 Da
IEP (calculated)
4.962
GRAVY (calculated)
0.094
Length
270 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVWGVVLVC LLICARVPSS WSDPDDEACL THLSESLEDP TKSLQNWTKS TFANACSGFT SYLQGATCNN GRIYKLSLTN LSLRGSISPY LSNCTNLQSL
101: DLSSNSLTGP IPSDLQSLVN LAVLNLSSNH LDGEIPPQLA FCAYLNVIDL HDNSLSGPIP QQFGLLVRLS AFDVSNNRLS GPIPPNLGNR SGNFPRFNAS
201: SFEGNKDLYG YPLAPLKSRG LSILAIVGIG LGSGFVSLVL SFTAVCIWLR VTEEKMASEE GKISQLMPDY
101: DLSSNSLTGP IPSDLQSLVN LAVLNLSSNH LDGEIPPQLA FCAYLNVIDL HDNSLSGPIP QQFGLLVRLS AFDVSNNRLS GPIPPNLGNR SGNFPRFNAS
201: SFEGNKDLYG YPLAPLKSRG LSILAIVGIG LGSGFVSLVL SFTAVCIWLR VTEEKMASEE GKISQLMPDY
001: MTRSHRLLLL LLLIFQTAQR LTTADPNDEA CLKNLRQNLE DPASNLRNWT NSVFSNPCSG FTSYLPGATC NNGRIYKLSL TNLSLRGSIS PFLSNCTNLQ
101: SLDLSSNQIS GVIPPEIQYL VNLAVLNLSS NHLSGEITPQ LALCAYLNVI DLHDNELSGQ IPQQLGLLAR LSAFDVSNNK LSGQIPTYLS NRTGNFPRFN
201: ASSFIGNKGL YGYPLQEMMM KSKGLSVMAI VGIGLGSGIA SLMISFTGVC LWLRITEKKI VEEEGKISQS MPDY
101: SLDLSSNQIS GVIPPEIQYL VNLAVLNLSS NHLSGEITPQ LALCAYLNVI DLHDNELSGQ IPQQLGLLAR LSAFDVSNNK LSGQIPTYLS NRTGNFPRFN
201: ASSFIGNKGL YGYPLQEMMM KSKGLSVMAI VGIGLGSGIA SLMISFTGVC LWLRITEKKI VEEEGKISQS MPDY
Arabidopsis Description
AtRLP44RLP44 [Source:UniProtKB/TrEMBL;Acc:A0A178VI92]
SUBAcon: [extracellular,plasma membrane]
SUBAcon: [extracellular,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.