Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G168900.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 99.65 | 99.65 |
| HORVU0Hr1G012140.1 | Barley | endoplasmic reticulum, extracellular, plasma membrane | 98.95 | 98.95 |
| TraesCS5B01G161200.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 97.91 | 98.94 |
| EES07661 | Sorghum | extracellular, plasma membrane | 80.84 | 81.4 |
| Zm00001d018344_P001 | Maize | extracellular, plasma membrane | 79.79 | 81.21 |
| Zm00001d052058_P001 | Maize | extracellular, plasma membrane | 77.35 | 79.29 |
| Os09t0131200-01 | Rice | plasma membrane | 76.66 | 78.01 |
| Solyc02g092040.1.1 | Tomato | extracellular | 65.51 | 70.41 |
| GSMUA_Achr2P08610_001 | Banana | plasma membrane | 68.64 | 70.36 |
| PGSC0003DMT400093490 | Potato | extracellular | 65.16 | 70.04 |
| GSMUA_Achr3P25790_001 | Banana | extracellular, plasma membrane, vacuole | 67.94 | 69.39 |
| GSMUA_Achr7P27510_001 | Banana | extracellular, plasma membrane | 59.58 | 67.86 |
| GSMUA_Achr3P30680_001 | Banana | extracellular, plasma membrane | 67.6 | 67.6 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 64.11 | 66.91 |
| VIT_07s0151g00470.t01 | Wine grape | plasma membrane | 62.72 | 66.67 |
| KRH28321 | Soybean | extracellular, plasma membrane | 59.58 | 63.57 |
| KRH77166 | Soybean | plasma membrane | 58.19 | 62.31 |
| CDY05959 | Canola | extracellular, plasma membrane | 59.58 | 61.96 |
| GSMUA_Achr1P14260_001 | Banana | plastid | 65.51 | 61.84 |
| AT3G49750.1 | Thale cress | extracellular, plasma membrane | 58.54 | 61.31 |
| Bra029968.1-P | Field mustard | extracellular | 59.58 | 61.29 |
| Bra037831.1-P | Field mustard | extracellular, plasma membrane, vacuole | 58.19 | 61.17 |
| AT5G65830.1 | Thale cress | extracellular, plasma membrane | 58.19 | 59.86 |
| CDX81298 | Canola | extracellular, plasma membrane | 49.13 | 58.02 |
| CDY18672 | Canola | mitochondrion, plasma membrane | 48.43 | 57.2 |
| TraesCS2A01G345900.1 | Wheat | extracellular | 29.97 | 37.07 |
| TraesCS3A01G401300.1 | Wheat | cytosol | 28.22 | 33.75 |
| TraesCS3A01G400800.1 | Wheat | extracellular | 30.66 | 33.08 |
| TraesCS7A01G410600.1 | Wheat | extracellular | 29.97 | 32.82 |
| TraesCS3A01G401200.1 | Wheat | plasma membrane | 30.31 | 32.22 |
| TraesCS3A01G401000.1 | Wheat | cytosol | 19.16 | 31.98 |
| TraesCS3A01G400700.1 | Wheat | extracellular, plasma membrane | 29.62 | 31.84 |
| TraesCS3A01G401100.1 | Wheat | extracellular, plasma membrane | 28.57 | 28.57 |
| TraesCS3A01G400900.1 | Wheat | extracellular, plasma membrane | 26.83 | 26.92 |
| TraesCS1A01G259600.1 | Wheat | plasma membrane | 34.15 | 16.2 |
| TraesCS4A01G229800.1 | Wheat | plasma membrane | 32.75 | 15.51 |
| TraesCS2A01G346000.1 | Wheat | plasma membrane | 32.75 | 15.04 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G163900.1 | EnsemblPlantsGene:TraesCS5A01G163900 | Gene3D:3.80.10.10 | InterPro:IPR032675 | InterPro:LRR_dom_sf | PANTHER:PTHR44839 |
| PRINTS:PR00019 | SEG:seg | SignalP:SignalP-noTM | SUPFAM:SSF52058 | TMHMM:TMhelix | MapMan:35.1 |
Description
No Description!
Coordinates
chr5A:+:351474206..351475069
Molecular Weight (calculated)
29832.9 Da
IEP (calculated)
6.770
GRAVY (calculated)
0.294
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQPSQHHHF PPFAVAVAVA AVLVLLSPPS AADPNDELCL SSLQESLSLR NWTKSFFTDP CDGFISKLQG VTCNNGRVYK LSLPGLSLAG SIPPELSNCT
101: NLQSLDLSSN ALSGAIPTEL SKLLNLAVLN LSANALSGAI PRELASCAYL NVIDLHGNQL SGPIPDELGL LVRLSTFDVS YNRLSGPIPV LLANRSIAGG
201: GGAVAAGTTA RFNASSFAGN KDLYGYPLPP MRGHGLSVLA IVGIGLGSGL LSLVLSFSAV CIWLRSTDRT AATPGEEGKI SHLMPAY
101: NLQSLDLSSN ALSGAIPTEL SKLLNLAVLN LSANALSGAI PRELASCAYL NVIDLHGNQL SGPIPDELGL LVRLSTFDVS YNRLSGPIPV LLANRSIAGG
201: GGAVAAGTTA RFNASSFAGN KDLYGYPLPP MRGHGLSVLA IVGIGLGSGL LSLVLSFSAV CIWLRSTDRT AATPGEEGKI SHLMPAY
001: MTRSHRLLLL LLLIFQTAQR LTTADPNDEA CLKNLRQNLE DPASNLRNWT NSVFSNPCSG FTSYLPGATC NNGRIYKLSL TNLSLRGSIS PFLSNCTNLQ
101: SLDLSSNQIS GVIPPEIQYL VNLAVLNLSS NHLSGEITPQ LALCAYLNVI DLHDNELSGQ IPQQLGLLAR LSAFDVSNNK LSGQIPTYLS NRTGNFPRFN
201: ASSFIGNKGL YGYPLQEMMM KSKGLSVMAI VGIGLGSGIA SLMISFTGVC LWLRITEKKI VEEEGKISQS MPDY
101: SLDLSSNQIS GVIPPEIQYL VNLAVLNLSS NHLSGEITPQ LALCAYLNVI DLHDNELSGQ IPQQLGLLAR LSAFDVSNNK LSGQIPTYLS NRTGNFPRFN
201: ASSFIGNKGL YGYPLQEMMM KSKGLSVMAI VGIGLGSGIA SLMISFTGVC LWLRITEKKI VEEEGKISQS MPDY
Arabidopsis Description
AtRLP44RLP44 [Source:UniProtKB/TrEMBL;Acc:A0A178VI92]
SUBAcon: [plasma membrane,extracellular]
SUBAcon: [plasma membrane,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.