Factsheet for TraesCS3A01G401200.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 6
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G343100.1
TraesCS2B01G340700.1
TraesCS2D01G321400.1
TraesCS6A01G203600.2
TraesCS6B01G223700.3
TraesCS6D01G186900.2
TraesCS7A01G293300.3
TraesCS7B01G182300.1
TraesCS7D01G291200.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48380.1	TraesCS2A01G343100.1	AT1G71830.1	19616764
AT5G48380.1	TraesCS2B01G340700.1	AT1G71830.1	19616764
AT5G48380.1	TraesCS2D01G321400.1	AT1G71830.1	19616764
AT5G48380.1	TraesCS6A01G203600.2	AT1G71830.1	19616764
AT5G48380.1	TraesCS6B01G223700.3	AT1G71830.1	19616764
AT5G48380.1	TraesCS6D01G186900.2	AT1G71830.1	19616764
AT5G48380.1	TraesCS7A01G293300.3	AT1G71830.1	19616764
AT5G48380.1	TraesCS7B01G182300.1	AT1G71830.1	19616764
AT5G48380.1	TraesCS7D01G291200.3	AT1G71830.1	19616764

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G400800.1	Wheat	extracellular	79.26	80.45
TraesCS3A01G401300.1	Wheat	cytosol	67.78	76.25
TraesCS3A01G401000.1	Wheat	cytosol	47.04	73.84
TraesCS3A01G400700.1	Wheat	extracellular, plasma membrane	68.52	69.29
TraesCS7A01G410600.1	Wheat	extracellular	55.19	56.87
TraesCS3A01G401100.1	Wheat	extracellular, plasma membrane	57.78	54.36
TraesCS3A01G400900.1	Wheat	extracellular, plasma membrane	56.3	53.15
Os01t0891700-01	Rice	plasma membrane	53.7	47.39
CDY38095	Canola	plasma membrane	41.85	42.64
CDX85492	Canola	plasma membrane	41.48	41.79
CDY38092	Canola	plasma membrane	41.11	41.42
CDX69430	Canola	extracellular	36.3	41.0
TraesCS2A01G345900.1	Wheat	extracellular	33.7	39.22
CDY16992	Canola	cytosol, plasma membrane, plastid	27.41	36.82
Bra040380.1-P	Field mustard	extracellular	31.85	36.6
CDY07991	Canola	plasma membrane	34.81	36.29
Bra001255.1-P	Field mustard	plasma membrane	33.33	34.75
Bra006366.1-P	Field mustard	mitochondrion	40.37	33.54
CDX70708	Canola	extracellular, plasma membrane, vacuole	42.22	31.84
TraesCS5A01G163900.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	32.22	30.31
PGSC0003DMT400070667	Potato	cytosol	24.44	29.86
TraesCS1A01G259600.1	Wheat	plasma membrane	61.85	27.6
VIT_05s0094g01290.t01	Wine grape	mitochondrion	11.48	24.22
TraesCS4A01G229800.1	Wheat	plasma membrane	47.04	20.96
PGSC0003DMT400070664	Potato	cytosol, plasma membrane, plastid	25.93	18.97
VIT_00s0220g00120.t01	Wine grape	plasma membrane	42.96	18.68
AT5G48380.1	Thale cress	plasma membrane	42.59	18.55
GSMUA_Achr9P08150_001	Banana	cytosol, nucleus, plastid	27.41	18.45
CDY48749	Canola	plasma membrane	42.22	18.3
VIT_00s2085g00010.t01	Wine grape	plasma membrane	41.85	18.26
PGSC0003DMT400071183	Potato	plasma membrane	41.11	18.11
PGSC0003DMT400075494	Potato	plasma membrane	38.89	18.04
PGSC0003DMT400075495	Potato	plasma membrane	38.89	17.86
Solyc06g082920.2.1	Tomato	plasma membrane	40.37	17.78
CDY05685	Canola	plasma membrane	41.11	17.76
CDX85334	Canola	plasma membrane	40.0	17.34
PGSC0003DMT400070657	Potato	peroxisome, plasma membrane, plastid	25.56	17.21
Bra020705.1-P	Field mustard	plasma membrane	31.85	15.58
Solyc07g006480.2.1	Tomato	plasma membrane	35.93	14.85
TraesCS2A01G346000.1	Wheat	plasma membrane	34.07	14.72
Solyc12g096710.1.1	Tomato	plasma membrane	39.63	13.26
GSMUA_Achr2P05730_001	Banana	cytosol, peroxisome, plasma membrane	16.3	10.53
PGSC0003DMT400070666	Potato	plastid	15.93	9.23
Bra037490.1-P	Field mustard	plastid	15.56	8.97
CDX86309	Canola	golgi, mitochondrion, plasma membrane, plastid	14.81	8.55
GSMUA_Achr6P28640_001	Banana	plastid	2.96	3.4
Bra038824.1-P	Field mustard	cytosol	4.07	3.32
Solyc12g096720.1.1	Tomato	cytosol	1.48	2.82
PGSC0003DMT400070694	Potato	cytosol	0.74	0.94
KRH21660	Soybean	cytosol	0.37	0.63

Protein Annotations

EnsemblPlants:TraesCS3A01G401200.1	EnsemblPlantsGene:TraesCS3A01G401200	Gene3D:3.80.10.10	InterPro:IPR032675	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf
PANTHER:PTHR44101	PANTHER:PTHR44101:SF3	PFAM:PF08263	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF52058
TMHMM:TMhelix	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr3A:-:647443214..647444026

Molecular Weight (calculated)

30029.1 Da

IEP (calculated)

7.285

GRAVY (calculated)

0.063

Length

270 amino acids

Sequence
(BLAST)

001: MLAMADDTKF ILLFLLLSSS SLCFGSEQDI QCLKSVYQSV IDPNGVLKSS WNFEDGTVGF ICRFTGVECW HPDKNMVLSL RLGNLGLQGT FPQGLQDCAS
101: MTGLDLSNNK FSGPIPQDIS RQVPYLTSLD LSYNSFSGSI PQNISNMTYL NVLILQHNQL SGQIPPQFDL LTRLSTFNVV DNLLSGSIPP SLLRFPAWNF
201: DGNQGLCGAP SDDCPRSRRR WRPVRIKLHR LNDESSIGAA VGFVVGFVVA FYFPHCFVCS ERLRAYVVRI

Best Arabidopsis Sequence Match ( AT3G28450.1 )
(BLAST)

001: MKEIGSKPRK LLPLCFIIFL CFCSSVMAAD EDDIRCLRGL KASLTDPQNA LKSWNFDNTT LGFLCNFVGV SCWNNQENRV INLELRDMGL SGKIPDSLQY
101: CASLQKLDLS SNRLSGNIPT ELCNWLPFLV SLDLSNNELN GEIPPDLAKC SFVNSLVLSD NRLSGQIPVQ FSALGRLGRF SVANNDLSGR IPVFFSSPSY
201: SSDDFSGNKG LCGRPLSSSC GGLSKKNLGI IIAAGVFGAA ASMLLAFGIW WYYHLKWTRR RRSGLTEVGV SGLAQRLRSH KLTQVSLFQK PLVKVKLGDL
301: MAATNNFNSE NIIVSTRTGT TYKALLPDGS ALAVKHLSTC KLGEREFRYE MNQLWELRHS NLAPLLGFCV VEEEKFLVYK YMSNGTLHSL LDSNRGELDW
401: STRFRIGLGA ARGLAWLHHG CRPPILHQNI CSSVILIDED FDARIIDSGL ARLMVPSDNN ESSFMTGDLG EFGYVAPEYS TTMLASLKGD VYGLGVVLLE
501: LATGLKAVGG EGFKGSLVDW VKQLESSGRI AETFDENIRG KGHDEEISKF VEIALNCVSS RPKERWSMFQ AYQSLKAIAE KQGYSFSEQD DDFPLIFDTQ
601: ENEKV

Arabidopsis Description

BIR2Inactive LRR receptor-like serine/threonine-protein kinase BIR2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSI9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.